Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
SKA3Q8IX90 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
SKA3Q8IX90 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SKA3Q8IX90 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC17.32■□□□□ 0.36
SKA3Q8IX90 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
SKA3Q8IX90 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SKA3Q8IX90 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SKA3Q8IX90 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SKA3Q8IX90 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC17.32■□□□□ 0.36
SKA3Q8IX90 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
SKA3Q8IX90 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SKA3Q8IX90 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC17.31■□□□□ 0.36
SKA3Q8IX90 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SKA3Q8IX90 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SKA3Q8IX90 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC17.31■□□□□ 0.36
SKA3Q8IX90 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SKA3Q8IX90 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SKA3Q8IX90 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
SKA3Q8IX90 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SKA3Q8IX90 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
SKA3Q8IX90 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SKA3Q8IX90 BID-204ENST00000399767 2129 ntTSL 2 BASIC17.31■□□□□ 0.36
SKA3Q8IX90 THEM4-205ENST00000489410 643 ntTSL 2 BASIC17.31■□□□□ 0.36
SKA3Q8IX90 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
SKA3Q8IX90 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SKA3Q8IX90 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
SKA3Q8IX90 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC17.31■□□□□ 0.36
SKA3Q8IX90 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
SKA3Q8IX90 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
SKA3Q8IX90 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SKA3Q8IX90 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SKA3Q8IX90 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SKA3Q8IX90 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
SKA3Q8IX90 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SKA3Q8IX90 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
SKA3Q8IX90 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SKA3Q8IX90 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SKA3Q8IX90 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
SKA3Q8IX90 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SKA3Q8IX90 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SKA3Q8IX90 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC17.3■□□□□ 0.36
SKA3Q8IX90 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SKA3Q8IX90 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SKA3Q8IX90 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SKA3Q8IX90 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC17.3■□□□□ 0.36
SKA3Q8IX90 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SKA3Q8IX90 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC17.3■□□□□ 0.36
SKA3Q8IX90 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
SKA3Q8IX90 KRT17P3-201ENST00000420566 1262 ntBASIC17.3■□□□□ 0.36
SKA3Q8IX90 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC17.3■□□□□ 0.36
SKA3Q8IX90 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC17.3■□□□□ 0.36
SKA3Q8IX90 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SKA3Q8IX90 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC17.3■□□□□ 0.36
SKA3Q8IX90 MAX-217ENST00000557277 728 ntTSL 3 BASIC17.3■□□□□ 0.36
SKA3Q8IX90 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SKA3Q8IX90 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC17.3■□□□□ 0.36
SKA3Q8IX90 AC087289.5-201ENST00000586076 3175 ntBASIC17.3■□□□□ 0.36
SKA3Q8IX90 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SKA3Q8IX90 TFP1-202ENST00000475455 1573 ntBASIC17.3■□□□□ 0.36
SKA3Q8IX90 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC17.3■□□□□ 0.36
SKA3Q8IX90 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC17.3■□□□□ 0.36
SKA3Q8IX90 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SKA3Q8IX90 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SKA3Q8IX90 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
SKA3Q8IX90 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SKA3Q8IX90 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SKA3Q8IX90 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
SKA3Q8IX90 LETM1P2-201ENST00000597330 2178 ntBASIC17.29■□□□□ 0.36
SKA3Q8IX90 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.29■□□□□ 0.36
SKA3Q8IX90 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC17.29■□□□□ 0.36
SKA3Q8IX90 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SKA3Q8IX90 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC17.29■□□□□ 0.36
SKA3Q8IX90 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SKA3Q8IX90 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SKA3Q8IX90 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SKA3Q8IX90 ADM-205ENST00000528544 586 ntTSL 2 BASIC17.29■□□□□ 0.36
SKA3Q8IX90 PNN-205ENST00000556530 601 ntTSL 2 BASIC17.29■□□□□ 0.36
SKA3Q8IX90 AL121829.2-201ENST00000620908 328 ntBASIC17.29■□□□□ 0.36
SKA3Q8IX90 AL121906.2-201ENST00000621597 723 ntBASIC17.29■□□□□ 0.36
SKA3Q8IX90 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC17.29■□□□□ 0.36
SKA3Q8IX90 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SKA3Q8IX90 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SKA3Q8IX90 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SKA3Q8IX90 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC17.29■□□□□ 0.36
SKA3Q8IX90 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC17.29■□□□□ 0.36
SKA3Q8IX90 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SKA3Q8IX90 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
SKA3Q8IX90 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
SKA3Q8IX90 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
SKA3Q8IX90 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC17.28■□□□□ 0.36
SKA3Q8IX90 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SKA3Q8IX90 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SKA3Q8IX90 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
SKA3Q8IX90 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SKA3Q8IX90 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC17.28■□□□□ 0.36
SKA3Q8IX90 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC17.28■□□□□ 0.36
SKA3Q8IX90 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SKA3Q8IX90 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC17.28■□□□□ 0.36
SKA3Q8IX90 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC17.28■□□□□ 0.36
SKA3Q8IX90 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms