Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
SH3RF1Q7Z6J0 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
SH3RF1Q7Z6J0 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
SH3RF1Q7Z6J0 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
SH3RF1Q7Z6J0 FAM197Y1-201ENST00000421178 764 ntBASIC22.49■■□□□ 1.19
SH3RF1Q7Z6J0 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
SH3RF1Q7Z6J0 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
SH3RF1Q7Z6J0 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
SH3RF1Q7Z6J0 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC22.49■■□□□ 1.19
SH3RF1Q7Z6J0 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC22.49■■□□□ 1.19
SH3RF1Q7Z6J0 RPS15-203ENST00000586096 570 ntTSL 2 BASIC22.49■■□□□ 1.19
SH3RF1Q7Z6J0 AC005363.2-201ENST00000618631 242 ntBASIC22.49■■□□□ 1.19
SH3RF1Q7Z6J0 Six3os1_6.1-201ENST00000620790 196 ntBASIC22.49■■□□□ 1.19
SH3RF1Q7Z6J0 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
SH3RF1Q7Z6J0 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
SH3RF1Q7Z6J0 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
SH3RF1Q7Z6J0 HTR7P1-201ENST00000538670 1336 ntBASIC22.49■■□□□ 1.19
SH3RF1Q7Z6J0 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
SH3RF1Q7Z6J0 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
SH3RF1Q7Z6J0 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC22.49■■□□□ 1.19
SH3RF1Q7Z6J0 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
SH3RF1Q7Z6J0 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
SH3RF1Q7Z6J0 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
SH3RF1Q7Z6J0 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
SH3RF1Q7Z6J0 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC22.48■■□□□ 1.19
SH3RF1Q7Z6J0 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
SH3RF1Q7Z6J0 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC22.48■■□□□ 1.19
SH3RF1Q7Z6J0 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
SH3RF1Q7Z6J0 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
SH3RF1Q7Z6J0 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC22.48■■□□□ 1.19
SH3RF1Q7Z6J0 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC22.48■■□□□ 1.19
SH3RF1Q7Z6J0 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
SH3RF1Q7Z6J0 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC22.48■■□□□ 1.19
SH3RF1Q7Z6J0 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
SH3RF1Q7Z6J0 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
SH3RF1Q7Z6J0 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
SH3RF1Q7Z6J0 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC22.48■■□□□ 1.19
SH3RF1Q7Z6J0 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
SH3RF1Q7Z6J0 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
SH3RF1Q7Z6J0 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC22.47■■□□□ 1.19
SH3RF1Q7Z6J0 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC22.47■■□□□ 1.19
SH3RF1Q7Z6J0 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
SH3RF1Q7Z6J0 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
SH3RF1Q7Z6J0 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
SH3RF1Q7Z6J0 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC22.47■■□□□ 1.19
SH3RF1Q7Z6J0 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC22.47■■□□□ 1.19
SH3RF1Q7Z6J0 RNF146-204ENST00000476956 884 ntTSL 2 BASIC22.47■■□□□ 1.19
SH3RF1Q7Z6J0 RMI2-205ENST00000576027 818 ntTSL 2 BASIC22.47■■□□□ 1.19
SH3RF1Q7Z6J0 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
SH3RF1Q7Z6J0 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
SH3RF1Q7Z6J0 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC22.47■■□□□ 1.19
SH3RF1Q7Z6J0 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC22.47■■□□□ 1.19
SH3RF1Q7Z6J0 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
SH3RF1Q7Z6J0 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC22.47■■□□□ 1.19
SH3RF1Q7Z6J0 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC22.46■■□□□ 1.19
SH3RF1Q7Z6J0 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SH3RF1Q7Z6J0 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SH3RF1Q7Z6J0 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC22.46■■□□□ 1.19
SH3RF1Q7Z6J0 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
SH3RF1Q7Z6J0 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC22.46■■□□□ 1.19
SH3RF1Q7Z6J0 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SH3RF1Q7Z6J0 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SH3RF1Q7Z6J0 KRT18P57-201ENST00000443599 1254 ntBASIC22.46■■□□□ 1.19
SH3RF1Q7Z6J0 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SH3RF1Q7Z6J0 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC22.46■■□□□ 1.19
SH3RF1Q7Z6J0 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC22.46■■□□□ 1.19
SH3RF1Q7Z6J0 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC22.46■■□□□ 1.19
SH3RF1Q7Z6J0 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SH3RF1Q7Z6J0 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC22.46■■□□□ 1.19
SH3RF1Q7Z6J0 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
SH3RF1Q7Z6J0 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
SH3RF1Q7Z6J0 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC22.46■■□□□ 1.19
SH3RF1Q7Z6J0 AC079598.2-202ENST00000546624 1451 ntBASIC22.46■■□□□ 1.19
SH3RF1Q7Z6J0 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
SH3RF1Q7Z6J0 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SH3RF1Q7Z6J0 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SH3RF1Q7Z6J0 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC22.46■■□□□ 1.19
SH3RF1Q7Z6J0 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
SH3RF1Q7Z6J0 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
SH3RF1Q7Z6J0 PKD1P6-201ENST00000343738 4769 ntBASIC22.45■■□□□ 1.18
SH3RF1Q7Z6J0 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SH3RF1Q7Z6J0 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC22.45■■□□□ 1.18
SH3RF1Q7Z6J0 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC22.45■■□□□ 1.18
SH3RF1Q7Z6J0 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.18
SH3RF1Q7Z6J0 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC22.45■■□□□ 1.18
SH3RF1Q7Z6J0 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC22.45■■□□□ 1.18
SH3RF1Q7Z6J0 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC22.45■■□□□ 1.18
SH3RF1Q7Z6J0 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SH3RF1Q7Z6J0 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
SH3RF1Q7Z6J0 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
SH3RF1Q7Z6J0 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC22.45■■□□□ 1.18
SH3RF1Q7Z6J0 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SH3RF1Q7Z6J0 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
SH3RF1Q7Z6J0 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SH3RF1Q7Z6J0 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC22.44■■□□□ 1.18
SH3RF1Q7Z6J0 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
SH3RF1Q7Z6J0 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
SH3RF1Q7Z6J0 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC22.44■■□□□ 1.18
SH3RF1Q7Z6J0 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC22.44■■□□□ 1.18
SH3RF1Q7Z6J0 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms