Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC14.25□□□□□ -0.13
PRKDCP78527 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
PRKDCP78527 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PRKDCP78527 AKR1C7P-201ENST00000305623 895 ntBASIC14.25□□□□□ -0.13
PRKDCP78527 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC14.25□□□□□ -0.13
PRKDCP78527 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC14.25□□□□□ -0.13
PRKDCP78527 FOSL1P1-201ENST00000511041 816 ntBASIC14.25□□□□□ -0.13
PRKDCP78527 AL121912.1-201ENST00000603683 238 ntBASIC14.25□□□□□ -0.13
PRKDCP78527 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC14.25□□□□□ -0.13
PRKDCP78527 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC14.25□□□□□ -0.13
PRKDCP78527 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC14.25□□□□□ -0.13
PRKDCP78527 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PRKDCP78527 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
PRKDCP78527 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC14.25□□□□□ -0.13
PRKDCP78527 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC14.25□□□□□ -0.13
PRKDCP78527 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
PRKDCP78527 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC14.25□□□□□ -0.13
PRKDCP78527 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC14.25□□□□□ -0.13
PRKDCP78527 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PRKDCP78527 TLE1-202ENST00000376484 666 ntTSL 3 BASIC14.25□□□□□ -0.13
PRKDCP78527 PHB2-202ENST00000440277 996 ntTSL 5 BASIC14.25□□□□□ -0.13
PRKDCP78527 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC14.25□□□□□ -0.13
PRKDCP78527 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
PRKDCP78527 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC14.25□□□□□ -0.13
PRKDCP78527 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC14.25□□□□□ -0.13
PRKDCP78527 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC14.25□□□□□ -0.13
PRKDCP78527 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PRKDCP78527 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
PRKDCP78527 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PRKDCP78527 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC14.24□□□□□ -0.13
PRKDCP78527 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC14.24□□□□□ -0.13
PRKDCP78527 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC14.24□□□□□ -0.13
PRKDCP78527 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC14.24□□□□□ -0.13
PRKDCP78527 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC14.24□□□□□ -0.13
PRKDCP78527 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
PRKDCP78527 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC14.24□□□□□ -0.13
PRKDCP78527 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PRKDCP78527 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PRKDCP78527 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PRKDCP78527 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC14.24□□□□□ -0.13
PRKDCP78527 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
PRKDCP78527 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC14.24□□□□□ -0.13
PRKDCP78527 MPI-205ENST00000562606 1052 ntTSL 3 BASIC14.24□□□□□ -0.13
PRKDCP78527 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC14.24□□□□□ -0.13
PRKDCP78527 AP001160.2-201ENST00000596071 487 ntBASIC14.24□□□□□ -0.13
PRKDCP78527 AC131212.4-201ENST00000623606 975 ntBASIC14.24□□□□□ -0.13
PRKDCP78527 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC14.24□□□□□ -0.13
PRKDCP78527 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PRKDCP78527 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC14.24□□□□□ -0.13
PRKDCP78527 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC14.24□□□□□ -0.13
PRKDCP78527 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PRKDCP78527 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC14.24□□□□□ -0.13
PRKDCP78527 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
PRKDCP78527 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC14.24□□□□□ -0.13
PRKDCP78527 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PRKDCP78527 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PRKDCP78527 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PRKDCP78527 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC14.23□□□□□ -0.13
PRKDCP78527 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PRKDCP78527 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PRKDCP78527 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC14.23□□□□□ -0.13
PRKDCP78527 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
PRKDCP78527 LINC01465-201ENST00000408887 1940 ntBASIC14.23□□□□□ -0.13
PRKDCP78527 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
PRKDCP78527 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
PRKDCP78527 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PRKDCP78527 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PRKDCP78527 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC14.23□□□□□ -0.13
PRKDCP78527 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC14.23□□□□□ -0.13
PRKDCP78527 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC14.23□□□□□ -0.13
PRKDCP78527 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PRKDCP78527 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PRKDCP78527 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
PRKDCP78527 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
PRKDCP78527 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
PRKDCP78527 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PRKDCP78527 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PRKDCP78527 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PRKDCP78527 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PRKDCP78527 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
PRKDCP78527 PGAM5P1-201ENST00000518923 814 ntBASIC14.23□□□□□ -0.13
PRKDCP78527 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC14.23□□□□□ -0.13
PRKDCP78527 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC14.23□□□□□ -0.13
PRKDCP78527 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PRKDCP78527 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC14.23□□□□□ -0.13
PRKDCP78527 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
PRKDCP78527 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PRKDCP78527 TOB2P1-201ENST00000469761 992 ntBASIC14.22□□□□□ -0.13
PRKDCP78527 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC14.22□□□□□ -0.13
PRKDCP78527 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC14.22□□□□□ -0.13
PRKDCP78527 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PRKDCP78527 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC14.22□□□□□ -0.13
PRKDCP78527 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PRKDCP78527 KRT18P58-201ENST00000527480 1120 ntBASIC14.22□□□□□ -0.13
PRKDCP78527 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
PRKDCP78527 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
PRKDCP78527 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
PRKDCP78527 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PRKDCP78527 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PRKDCP78527 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms