Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.97■□□□□ 0.63
FOXA1P55317 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
FOXA1P55317 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.97■□□□□ 0.63
FOXA1P55317 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
FOXA1P55317 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
FOXA1P55317 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
FOXA1P55317 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
FOXA1P55317 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
FOXA1P55317 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
FOXA1P55317 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
FOXA1P55317 METTL15-202ENST00000403099 795 ntTSL 5 BASIC18.96■□□□□ 0.63
FOXA1P55317 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC18.96■□□□□ 0.63
FOXA1P55317 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC18.96■□□□□ 0.63
FOXA1P55317 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
FOXA1P55317 TFP1-202ENST00000475455 1573 ntBASIC18.96■□□□□ 0.63
FOXA1P55317 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
FOXA1P55317 LINC01465-201ENST00000408887 1940 ntBASIC18.96■□□□□ 0.63
FOXA1P55317 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
FOXA1P55317 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.95■□□□□ 0.62
FOXA1P55317 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
FOXA1P55317 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
FOXA1P55317 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
FOXA1P55317 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC18.95■□□□□ 0.62
FOXA1P55317 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
FOXA1P55317 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
FOXA1P55317 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
FOXA1P55317 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.95■□□□□ 0.62
FOXA1P55317 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
FOXA1P55317 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
FOXA1P55317 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.95■□□□□ 0.62
FOXA1P55317 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
FOXA1P55317 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
FOXA1P55317 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.95■□□□□ 0.62
FOXA1P55317 AC026185.1-201ENST00000445748 174 ntBASIC18.95■□□□□ 0.62
FOXA1P55317 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.95■□□□□ 0.62
FOXA1P55317 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
FOXA1P55317 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC18.95■□□□□ 0.62
FOXA1P55317 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
FOXA1P55317 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
FOXA1P55317 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
FOXA1P55317 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.95■□□□□ 0.62
FOXA1P55317 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
FOXA1P55317 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
FOXA1P55317 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
FOXA1P55317 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
FOXA1P55317 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.95■□□□□ 0.62
FOXA1P55317 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
FOXA1P55317 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
FOXA1P55317 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
FOXA1P55317 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
FOXA1P55317 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
FOXA1P55317 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
FOXA1P55317 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
FOXA1P55317 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.94■□□□□ 0.62
FOXA1P55317 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
FOXA1P55317 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
FOXA1P55317 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
FOXA1P55317 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.94■□□□□ 0.62
FOXA1P55317 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.94■□□□□ 0.62
FOXA1P55317 AL137784.2-201ENST00000607332 1000 ntBASIC18.94■□□□□ 0.62
FOXA1P55317 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
FOXA1P55317 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
FOXA1P55317 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
FOXA1P55317 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.94■□□□□ 0.62
FOXA1P55317 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
FOXA1P55317 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
FOXA1P55317 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
FOXA1P55317 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
FOXA1P55317 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
FOXA1P55317 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.94■□□□□ 0.62
FOXA1P55317 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
FOXA1P55317 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
FOXA1P55317 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
FOXA1P55317 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
FOXA1P55317 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
FOXA1P55317 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
FOXA1P55317 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
FOXA1P55317 AC124283.5-201ENST00000624661 1809 ntBASIC18.93■□□□□ 0.62
FOXA1P55317 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.93■□□□□ 0.62
FOXA1P55317 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.93■□□□□ 0.62
FOXA1P55317 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
FOXA1P55317 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
FOXA1P55317 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.93■□□□□ 0.62
FOXA1P55317 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
FOXA1P55317 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
FOXA1P55317 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
FOXA1P55317 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC18.93■□□□□ 0.62
FOXA1P55317 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.93■□□□□ 0.62
FOXA1P55317 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
FOXA1P55317 MIPEPP3-201ENST00000412105 444 ntBASIC18.93■□□□□ 0.62
FOXA1P55317 SERPINH1P1-201ENST00000419794 1249 ntBASIC18.93■□□□□ 0.62
FOXA1P55317 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
FOXA1P55317 DLX3-202ENST00000512495 834 ntTSL 2 BASIC18.93■□□□□ 0.62
FOXA1P55317 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
FOXA1P55317 OAS3-207ENST00000551007 998 ntTSL 2 BASIC18.93■□□□□ 0.62
FOXA1P55317 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC18.93■□□□□ 0.62
FOXA1P55317 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC18.93■□□□□ 0.62
FOXA1P55317 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
FOXA1P55317 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
FOXA1P55317 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms