Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LIG3P49916 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.5■□□□□ 0.87
LIG3P49916 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC20.5■□□□□ 0.87
LIG3P49916 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.5■□□□□ 0.87
LIG3P49916 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC20.5■□□□□ 0.87
LIG3P49916 AL049812.1-201ENST00000432563 2267 ntBASIC20.5■□□□□ 0.87
LIG3P49916 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.5■□□□□ 0.87
LIG3P49916 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.5■□□□□ 0.87
LIG3P49916 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC20.49■□□□□ 0.87
LIG3P49916 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.49■□□□□ 0.87
LIG3P49916 AC125437.2-201ENST00000625180 2167 ntBASIC20.49■□□□□ 0.87
LIG3P49916 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LIG3P49916 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LIG3P49916 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.49■□□□□ 0.87
LIG3P49916 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
LIG3P49916 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
LIG3P49916 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LIG3P49916 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
LIG3P49916 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.49■□□□□ 0.87
LIG3P49916 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LIG3P49916 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
LIG3P49916 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC20.49■□□□□ 0.87
LIG3P49916 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
LIG3P49916 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LIG3P49916 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC20.49■□□□□ 0.87
LIG3P49916 AC083880.1-201ENST00000608266 535 ntBASIC20.49■□□□□ 0.87
LIG3P49916 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LIG3P49916 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
LIG3P49916 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC20.49■□□□□ 0.87
LIG3P49916 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
LIG3P49916 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC20.49■□□□□ 0.87
LIG3P49916 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
LIG3P49916 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LIG3P49916 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC20.49■□□□□ 0.87
LIG3P49916 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC20.49■□□□□ 0.87
LIG3P49916 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
LIG3P49916 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
LIG3P49916 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
LIG3P49916 ADK-206ENST00000541550 2222 ntTSL 2 BASIC20.49■□□□□ 0.87
LIG3P49916 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LIG3P49916 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC20.48■□□□□ 0.87
LIG3P49916 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LIG3P49916 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LIG3P49916 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.48■□□□□ 0.87
LIG3P49916 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LIG3P49916 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.48■□□□□ 0.87
LIG3P49916 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC20.48■□□□□ 0.87
LIG3P49916 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
LIG3P49916 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LIG3P49916 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LIG3P49916 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC20.48■□□□□ 0.87
LIG3P49916 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LIG3P49916 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.48■□□□□ 0.87
LIG3P49916 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LIG3P49916 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
LIG3P49916 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LIG3P49916 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
LIG3P49916 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LIG3P49916 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
LIG3P49916 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.47■□□□□ 0.87
LIG3P49916 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC20.47■□□□□ 0.87
LIG3P49916 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LIG3P49916 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.47■□□□□ 0.87
LIG3P49916 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.47■□□□□ 0.87
LIG3P49916 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LIG3P49916 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
LIG3P49916 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.47■□□□□ 0.87
LIG3P49916 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.47■□□□□ 0.87
LIG3P49916 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LIG3P49916 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LIG3P49916 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LIG3P49916 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.47■□□□□ 0.87
LIG3P49916 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
LIG3P49916 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
LIG3P49916 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LIG3P49916 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LIG3P49916 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
LIG3P49916 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
LIG3P49916 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
LIG3P49916 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LIG3P49916 AC007225.1-201ENST00000566331 1836 ntBASIC20.46■□□□□ 0.87
LIG3P49916 AC087633.2-202ENST00000565166 1439 ntBASIC20.46■□□□□ 0.87
LIG3P49916 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LIG3P49916 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LIG3P49916 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
LIG3P49916 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LIG3P49916 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.46■□□□□ 0.87
LIG3P49916 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.46■□□□□ 0.87
LIG3P49916 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LIG3P49916 AC121338.2-201ENST00000622535 1744 ntBASIC20.46■□□□□ 0.87
LIG3P49916 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LIG3P49916 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LIG3P49916 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
LIG3P49916 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
LIG3P49916 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
LIG3P49916 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
LIG3P49916 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LIG3P49916 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
LIG3P49916 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LIG3P49916 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms