Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.42■□□□□ 0.54
SOX3P41225 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
SOX3P41225 AC124283.5-201ENST00000624661 1809 ntBASIC18.42■□□□□ 0.54
SOX3P41225 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SOX3P41225 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
SOX3P41225 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SOX3P41225 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SOX3P41225 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SOX3P41225 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SOX3P41225 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SOX3P41225 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.41■□□□□ 0.54
SOX3P41225 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SOX3P41225 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SOX3P41225 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SOX3P41225 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SOX3P41225 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC18.41■□□□□ 0.54
SOX3P41225 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.41■□□□□ 0.54
SOX3P41225 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.41■□□□□ 0.54
SOX3P41225 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC18.41■□□□□ 0.54
SOX3P41225 AL359736.2-201ENST00000621992 437 ntBASIC18.41■□□□□ 0.54
SOX3P41225 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.41■□□□□ 0.54
SOX3P41225 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SOX3P41225 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SOX3P41225 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.41■□□□□ 0.54
SOX3P41225 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SOX3P41225 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SOX3P41225 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SOX3P41225 KRT8P17-201ENST00000453110 1448 ntBASIC18.4■□□□□ 0.54
SOX3P41225 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC18.4■□□□□ 0.54
SOX3P41225 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.4■□□□□ 0.54
SOX3P41225 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SOX3P41225 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SOX3P41225 PEX7-202ENST00000367756 680 ntTSL 3 BASIC18.4■□□□□ 0.54
SOX3P41225 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.4■□□□□ 0.54
SOX3P41225 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
SOX3P41225 RPPH1-201ENST00000516869 333 ntBASIC18.4■□□□□ 0.54
SOX3P41225 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.4■□□□□ 0.54
SOX3P41225 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SOX3P41225 MTDHP1-201ENST00000605323 784 ntBASIC18.4■□□□□ 0.54
SOX3P41225 TCF3P1-201ENST00000423021 1937 ntBASIC18.4■□□□□ 0.54
SOX3P41225 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SOX3P41225 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
SOX3P41225 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SOX3P41225 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SOX3P41225 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
SOX3P41225 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.4■□□□□ 0.54
SOX3P41225 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SOX3P41225 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SOX3P41225 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SOX3P41225 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.4■□□□□ 0.54
SOX3P41225 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.54
SOX3P41225 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
SOX3P41225 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.54
SOX3P41225 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SOX3P41225 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SOX3P41225 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
SOX3P41225 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SOX3P41225 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.39■□□□□ 0.53
SOX3P41225 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SOX3P41225 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.39■□□□□ 0.53
SOX3P41225 RNF121-214ENST00000533380 870 ntTSL 3 BASIC18.39■□□□□ 0.53
SOX3P41225 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC18.39■□□□□ 0.53
SOX3P41225 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC18.39■□□□□ 0.53
SOX3P41225 FAM197Y4-202ENST00000622692 608 ntBASIC18.39■□□□□ 0.53
SOX3P41225 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SOX3P41225 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18.39■□□□□ 0.53
SOX3P41225 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
SOX3P41225 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SOX3P41225 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SOX3P41225 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SOX3P41225 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
SOX3P41225 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SOX3P41225 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
SOX3P41225 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
SOX3P41225 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SOX3P41225 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
SOX3P41225 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SOX3P41225 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SOX3P41225 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.38■□□□□ 0.53
SOX3P41225 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SOX3P41225 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SOX3P41225 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC18.38■□□□□ 0.53
SOX3P41225 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.38■□□□□ 0.53
SOX3P41225 DET1-205ENST00000558413 583 ntTSL 4 BASIC18.38■□□□□ 0.53
SOX3P41225 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.38■□□□□ 0.53
SOX3P41225 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.38■□□□□ 0.53
SOX3P41225 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SOX3P41225 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SOX3P41225 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.38■□□□□ 0.53
SOX3P41225 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SOX3P41225 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SOX3P41225 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SOX3P41225 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SOX3P41225 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SOX3P41225 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SOX3P41225 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.37■□□□□ 0.53
SOX3P41225 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.37■□□□□ 0.53
SOX3P41225 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.37■□□□□ 0.53
SOX3P41225 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SOX3P41225 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms