Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC23.13■■□□□ 1.29
HMGB1P09429 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC23.13■■□□□ 1.29
HMGB1P09429 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
HMGB1P09429 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
HMGB1P09429 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
HMGB1P09429 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
HMGB1P09429 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
HMGB1P09429 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
HMGB1P09429 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
HMGB1P09429 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
HMGB1P09429 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC23.12■■□□□ 1.29
HMGB1P09429 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
HMGB1P09429 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
HMGB1P09429 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
HMGB1P09429 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC23.12■■□□□ 1.29
HMGB1P09429 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
HMGB1P09429 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC23.12■■□□□ 1.29
HMGB1P09429 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC23.12■■□□□ 1.29
HMGB1P09429 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC23.12■■□□□ 1.29
HMGB1P09429 NME1-207ENST00000480143 964 ntTSL 2 BASIC23.12■■□□□ 1.29
HMGB1P09429 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC23.12■■□□□ 1.29
HMGB1P09429 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC23.12■■□□□ 1.29
HMGB1P09429 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC23.12■■□□□ 1.29
HMGB1P09429 AC005332.7-201ENST00000614046 2005 ntBASIC23.12■■□□□ 1.29
HMGB1P09429 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
HMGB1P09429 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
HMGB1P09429 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
HMGB1P09429 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
HMGB1P09429 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
HMGB1P09429 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC23.11■■□□□ 1.29
HMGB1P09429 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
HMGB1P09429 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
HMGB1P09429 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC23.11■■□□□ 1.29
HMGB1P09429 AC026366.1-201ENST00000488803 879 ntBASIC23.11■■□□□ 1.29
HMGB1P09429 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
HMGB1P09429 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC23.11■■□□□ 1.29
HMGB1P09429 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC23.11■■□□□ 1.29
HMGB1P09429 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC23.11■■□□□ 1.29
HMGB1P09429 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
HMGB1P09429 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
HMGB1P09429 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC23.1■■□□□ 1.29
HMGB1P09429 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC23.1■■□□□ 1.29
HMGB1P09429 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
HMGB1P09429 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
HMGB1P09429 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
HMGB1P09429 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
HMGB1P09429 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC23.1■■□□□ 1.29
HMGB1P09429 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC23.1■■□□□ 1.29
HMGB1P09429 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC23.1■■□□□ 1.29
HMGB1P09429 KRT18P16-201ENST00000510337 1294 ntBASIC23.1■■□□□ 1.29
HMGB1P09429 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC23.1■■□□□ 1.29
HMGB1P09429 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC23.1■■□□□ 1.29
HMGB1P09429 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC23.1■■□□□ 1.29
HMGB1P09429 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
HMGB1P09429 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
HMGB1P09429 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
HMGB1P09429 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC23.09■■□□□ 1.29
HMGB1P09429 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
HMGB1P09429 KRT17P3-201ENST00000420566 1262 ntBASIC23.09■■□□□ 1.29
HMGB1P09429 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
HMGB1P09429 THEM4-205ENST00000489410 643 ntTSL 2 BASIC23.09■■□□□ 1.29
HMGB1P09429 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC23.09■■□□□ 1.29
HMGB1P09429 PRKY-204ENST00000533551 1019 ntBASIC23.09■■□□□ 1.29
HMGB1P09429 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
HMGB1P09429 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC23.09■■□□□ 1.29
HMGB1P09429 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC23.09■■□□□ 1.29
HMGB1P09429 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
HMGB1P09429 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
HMGB1P09429 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
HMGB1P09429 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC23.09■■□□□ 1.29
HMGB1P09429 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
HMGB1P09429 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
HMGB1P09429 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC23.09■■□□□ 1.29
HMGB1P09429 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
HMGB1P09429 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
HMGB1P09429 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
HMGB1P09429 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
HMGB1P09429 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
HMGB1P09429 KRT8P8-201ENST00000434750 1448 ntBASIC23.08■■□□□ 1.29
HMGB1P09429 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
HMGB1P09429 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
HMGB1P09429 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
HMGB1P09429 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.29
HMGB1P09429 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
HMGB1P09429 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
HMGB1P09429 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC23.08■■□□□ 1.29
HMGB1P09429 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
HMGB1P09429 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC23.08■■□□□ 1.29
HMGB1P09429 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.29
HMGB1P09429 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
HMGB1P09429 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
HMGB1P09429 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC23.08■■□□□ 1.29
HMGB1P09429 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
HMGB1P09429 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC23.08■■□□□ 1.28
HMGB1P09429 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
HMGB1P09429 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
HMGB1P09429 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC23.07■■□□□ 1.28
HMGB1P09429 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
HMGB1P09429 Z82202.1-201ENST00000623446 1880 ntBASIC23.07■■□□□ 1.28
HMGB1P09429 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC23.07■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms