Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
LDB3O75112 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.45■□□□□ 0.54
LDB3O75112 AC124016.1-201ENST00000609552 612 ntBASIC18.45■□□□□ 0.54
LDB3O75112 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.45■□□□□ 0.54
LDB3O75112 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LDB3O75112 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LDB3O75112 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LDB3O75112 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
LDB3O75112 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LDB3O75112 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.45■□□□□ 0.54
LDB3O75112 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.45■□□□□ 0.54
LDB3O75112 AL158211.5-201ENST00000623583 2518 ntBASIC18.45■□□□□ 0.54
LDB3O75112 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LDB3O75112 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
LDB3O75112 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.44■□□□□ 0.54
LDB3O75112 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
LDB3O75112 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.44■□□□□ 0.54
LDB3O75112 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LDB3O75112 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LDB3O75112 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LDB3O75112 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LDB3O75112 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.44■□□□□ 0.54
LDB3O75112 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LDB3O75112 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LDB3O75112 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.44■□□□□ 0.54
LDB3O75112 RPPH1-201ENST00000516869 333 ntBASIC18.44■□□□□ 0.54
LDB3O75112 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC18.44■□□□□ 0.54
LDB3O75112 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.44■□□□□ 0.54
LDB3O75112 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
LDB3O75112 TMEM191A-211ENST00000637163 1067 ntBASIC18.44■□□□□ 0.54
LDB3O75112 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LDB3O75112 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.44■□□□□ 0.54
LDB3O75112 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
LDB3O75112 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.44■□□□□ 0.54
LDB3O75112 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.44■□□□□ 0.54
LDB3O75112 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LDB3O75112 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
LDB3O75112 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
LDB3O75112 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LDB3O75112 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.44■□□□□ 0.54
LDB3O75112 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
LDB3O75112 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC18.43■□□□□ 0.54
LDB3O75112 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.43■□□□□ 0.54
LDB3O75112 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LDB3O75112 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LDB3O75112 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LDB3O75112 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
LDB3O75112 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LDB3O75112 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LDB3O75112 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
LDB3O75112 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.43■□□□□ 0.54
LDB3O75112 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.43■□□□□ 0.54
LDB3O75112 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.43■□□□□ 0.54
LDB3O75112 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.43■□□□□ 0.54
LDB3O75112 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
LDB3O75112 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
LDB3O75112 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
LDB3O75112 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC18.43■□□□□ 0.54
LDB3O75112 YBX1P10-201ENST00000444752 975 ntBASIC18.43■□□□□ 0.54
LDB3O75112 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC18.43■□□□□ 0.54
LDB3O75112 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
LDB3O75112 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
LDB3O75112 AC142381.4-202ENST00000563973 229 ntBASIC18.43■□□□□ 0.54
LDB3O75112 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.43■□□□□ 0.54
LDB3O75112 AL359736.2-201ENST00000621992 437 ntBASIC18.43■□□□□ 0.54
LDB3O75112 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
LDB3O75112 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LDB3O75112 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.43■□□□□ 0.54
LDB3O75112 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LDB3O75112 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
LDB3O75112 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LDB3O75112 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LDB3O75112 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
LDB3O75112 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LDB3O75112 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
LDB3O75112 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
LDB3O75112 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.42■□□□□ 0.54
LDB3O75112 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.42■□□□□ 0.54
LDB3O75112 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
LDB3O75112 AL158047.1-201ENST00000445918 881 ntBASIC18.42■□□□□ 0.54
LDB3O75112 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.42■□□□□ 0.54
LDB3O75112 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.42■□□□□ 0.54
LDB3O75112 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LDB3O75112 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC18.42■□□□□ 0.54
LDB3O75112 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.42■□□□□ 0.54
LDB3O75112 FAM197Y4-202ENST00000622692 608 ntBASIC18.42■□□□□ 0.54
LDB3O75112 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
LDB3O75112 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LDB3O75112 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LDB3O75112 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
LDB3O75112 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LDB3O75112 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
LDB3O75112 AIRN-201ENST00000601203 4374 ntBASIC18.42■□□□□ 0.54
LDB3O75112 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
LDB3O75112 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
LDB3O75112 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDB3O75112 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDB3O75112 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
LDB3O75112 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDB3O75112 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms