Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CACNA1AO00555 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
CACNA1AO00555 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CACNA1AO00555 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CACNA1AO00555 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CACNA1AO00555 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
CACNA1AO00555 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CACNA1AO00555 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC18.57■□□□□ 0.56
CACNA1AO00555 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CACNA1AO00555 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC18.57■□□□□ 0.56
CACNA1AO00555 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.57■□□□□ 0.56
CACNA1AO00555 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CACNA1AO00555 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CACNA1AO00555 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CACNA1AO00555 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CACNA1AO00555 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CACNA1AO00555 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CACNA1AO00555 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CACNA1AO00555 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CACNA1AO00555 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
CACNA1AO00555 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CACNA1AO00555 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.57■□□□□ 0.56
CACNA1AO00555 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.57■□□□□ 0.56
CACNA1AO00555 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC18.57■□□□□ 0.56
CACNA1AO00555 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CACNA1AO00555 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
CACNA1AO00555 KRT8P36-201ENST00000489121 1440 ntBASIC18.56■□□□□ 0.56
CACNA1AO00555 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.56■□□□□ 0.56
CACNA1AO00555 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC18.56■□□□□ 0.56
CACNA1AO00555 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CACNA1AO00555 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
CACNA1AO00555 HES2-202ENST00000377836 507 ntTSL 2 BASIC18.56■□□□□ 0.56
CACNA1AO00555 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CACNA1AO00555 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC18.56■□□□□ 0.56
CACNA1AO00555 AC092364.2-202ENST00000597012 1073 ntBASIC18.56■□□□□ 0.56
CACNA1AO00555 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC18.56■□□□□ 0.56
CACNA1AO00555 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CACNA1AO00555 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.56■□□□□ 0.56
CACNA1AO00555 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CACNA1AO00555 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CACNA1AO00555 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC18.56■□□□□ 0.56
CACNA1AO00555 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CACNA1AO00555 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CACNA1AO00555 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.56■□□□□ 0.56
CACNA1AO00555 PNN-202ENST00000553331 656 ntTSL 3 BASIC18.56■□□□□ 0.56
CACNA1AO00555 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CACNA1AO00555 AC106730.1-201ENST00000566722 1090 ntBASIC18.56■□□□□ 0.56
CACNA1AO00555 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
CACNA1AO00555 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CACNA1AO00555 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CACNA1AO00555 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CACNA1AO00555 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CACNA1AO00555 MIR940-201ENST00000401276 94 ntBASIC18.55■□□□□ 0.56
CACNA1AO00555 AC007274.1-201ENST00000439805 662 ntBASIC18.55■□□□□ 0.56
CACNA1AO00555 TOB2P1-201ENST00000469761 992 ntBASIC18.55■□□□□ 0.56
CACNA1AO00555 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.55■□□□□ 0.56
CACNA1AO00555 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
CACNA1AO00555 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC18.55■□□□□ 0.56
CACNA1AO00555 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CACNA1AO00555 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC18.55■□□□□ 0.56
CACNA1AO00555 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC18.55■□□□□ 0.56
CACNA1AO00555 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CACNA1AO00555 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CACNA1AO00555 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CACNA1AO00555 RPSAP43-201ENST00000402237 625 ntBASIC18.55■□□□□ 0.56
CACNA1AO00555 AC034232.1-201ENST00000506026 1064 ntBASIC18.55■□□□□ 0.56
CACNA1AO00555 KRT8P26-201ENST00000534154 1276 ntBASIC18.55■□□□□ 0.56
CACNA1AO00555 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC18.55■□□□□ 0.56
CACNA1AO00555 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC18.55■□□□□ 0.56
CACNA1AO00555 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CACNA1AO00555 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC18.55■□□□□ 0.56
CACNA1AO00555 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
CACNA1AO00555 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.54■□□□□ 0.56
CACNA1AO00555 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CACNA1AO00555 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CACNA1AO00555 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC18.54■□□□□ 0.56
CACNA1AO00555 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
CACNA1AO00555 AC138894.3-201ENST00000603787 634 ntBASIC18.54■□□□□ 0.56
CACNA1AO00555 AC116351.2-201ENST00000606540 1585 ntBASIC18.54■□□□□ 0.56
CACNA1AO00555 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC18.54■□□□□ 0.56
CACNA1AO00555 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.54■□□□□ 0.56
CACNA1AO00555 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.54■□□□□ 0.56
CACNA1AO00555 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC18.54■□□□□ 0.56
CACNA1AO00555 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.54■□□□□ 0.56
CACNA1AO00555 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CACNA1AO00555 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CACNA1AO00555 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.54■□□□□ 0.56
CACNA1AO00555 AC073648.2-201ENST00000510116 352 ntBASIC18.54■□□□□ 0.56
CACNA1AO00555 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CACNA1AO00555 ABBA01031661.1-201ENST00000634362 1253 ntBASIC18.54■□□□□ 0.56
CACNA1AO00555 HLA-A-209ENST00000638375 975 ntBASIC18.54■□□□□ 0.56
CACNA1AO00555 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CACNA1AO00555 GCA-201ENST00000233612 1694 ntTSL 2 BASIC18.53■□□□□ 0.56
CACNA1AO00555 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CACNA1AO00555 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CACNA1AO00555 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CACNA1AO00555 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC18.53■□□□□ 0.56
CACNA1AO00555 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CACNA1AO00555 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CACNA1AO00555 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms