Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 AC097658.1-201ENST00000475555 843 ntBASIC18.23■□□□□ 0.51
HMGN4O00479 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC18.23■□□□□ 0.51
HMGN4O00479 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HMGN4O00479 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
HMGN4O00479 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC18.23■□□□□ 0.51
HMGN4O00479 PFKL-212ENST00000628044 129 ntTSL 3 BASIC18.23■□□□□ 0.51
HMGN4O00479 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGN4O00479 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGN4O00479 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.23■□□□□ 0.51
HMGN4O00479 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.23■□□□□ 0.51
HMGN4O00479 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HMGN4O00479 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
HMGN4O00479 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HMGN4O00479 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HMGN4O00479 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
HMGN4O00479 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
HMGN4O00479 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
HMGN4O00479 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
HMGN4O00479 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HMGN4O00479 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HMGN4O00479 RPS2P52-201ENST00000469610 820 ntBASIC18.22■□□□□ 0.51
HMGN4O00479 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.22■□□□□ 0.51
HMGN4O00479 HLA-B-256ENST00000639848 1089 ntBASIC18.22■□□□□ 0.51
HMGN4O00479 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.22■□□□□ 0.51
HMGN4O00479 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
HMGN4O00479 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
HMGN4O00479 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HMGN4O00479 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HMGN4O00479 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
HMGN4O00479 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
HMGN4O00479 AC092368.3-202ENST00000574180 1591 ntBASIC18.21■□□□□ 0.51
HMGN4O00479 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.21■□□□□ 0.51
HMGN4O00479 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.21■□□□□ 0.51
HMGN4O00479 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HMGN4O00479 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
HMGN4O00479 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HMGN4O00479 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HMGN4O00479 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
HMGN4O00479 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.21■□□□□ 0.51
HMGN4O00479 TK2-208ENST00000545043 1120 ntTSL 2 BASIC18.21■□□□□ 0.51
HMGN4O00479 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.21■□□□□ 0.51
HMGN4O00479 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.21■□□□□ 0.51
HMGN4O00479 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.21■□□□□ 0.51
HMGN4O00479 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC18.21■□□□□ 0.51
HMGN4O00479 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
HMGN4O00479 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HMGN4O00479 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HMGN4O00479 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.21■□□□□ 0.51
HMGN4O00479 TNXA-203ENST00000507684 2038 ntBASIC18.21■□□□□ 0.51
HMGN4O00479 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HMGN4O00479 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
HMGN4O00479 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
HMGN4O00479 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HMGN4O00479 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.2■□□□□ 0.5
HMGN4O00479 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGN4O00479 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGN4O00479 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.2■□□□□ 0.5
HMGN4O00479 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
HMGN4O00479 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HMGN4O00479 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
HMGN4O00479 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.2■□□□□ 0.5
HMGN4O00479 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGN4O00479 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HMGN4O00479 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.2■□□□□ 0.5
HMGN4O00479 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.2■□□□□ 0.5
HMGN4O00479 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC18.2■□□□□ 0.5
HMGN4O00479 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC18.2■□□□□ 0.5
HMGN4O00479 AC098934.4-201ENST00000564127 592 ntBASIC18.2■□□□□ 0.5
HMGN4O00479 AL138781.1-201ENST00000566567 1274 ntBASIC18.2■□□□□ 0.5
HMGN4O00479 GXYLT1P5-201ENST00000614548 1189 ntBASIC18.2■□□□□ 0.5
HMGN4O00479 GAMT-205ENST00000640762 751 ntTSL 5 BASIC18.2■□□□□ 0.5
HMGN4O00479 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.2■□□□□ 0.5
HMGN4O00479 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGN4O00479 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGN4O00479 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGN4O00479 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
HMGN4O00479 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGN4O00479 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGN4O00479 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGN4O00479 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGN4O00479 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.2■□□□□ 0.5
HMGN4O00479 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
HMGN4O00479 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGN4O00479 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGN4O00479 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGN4O00479 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
HMGN4O00479 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.19■□□□□ 0.5
HMGN4O00479 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGN4O00479 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
HMGN4O00479 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HMGN4O00479 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.19■□□□□ 0.5
HMGN4O00479 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.19■□□□□ 0.5
HMGN4O00479 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.19■□□□□ 0.5
HMGN4O00479 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC18.19■□□□□ 0.5
HMGN4O00479 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
HMGN4O00479 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
HMGN4O00479 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC18.19■□□□□ 0.5
HMGN4O00479 AC083880.1-201ENST00000608266 535 ntBASIC18.19■□□□□ 0.5
HMGN4O00479 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.19■□□□□ 0.5
HMGN4O00479 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms