Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
CBX4O00257 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC20.04■□□□□ 0.8
CBX4O00257 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CBX4O00257 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CBX4O00257 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC20.04■□□□□ 0.8
CBX4O00257 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.04■□□□□ 0.8
CBX4O00257 AC073912.3-201ENST00000624414 853 ntBASIC20.04■□□□□ 0.8
CBX4O00257 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CBX4O00257 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CBX4O00257 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CBX4O00257 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.04■□□□□ 0.8
CBX4O00257 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.04■□□□□ 0.8
CBX4O00257 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CBX4O00257 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CBX4O00257 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.04■□□□□ 0.8
CBX4O00257 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
CBX4O00257 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CBX4O00257 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.03■□□□□ 0.8
CBX4O00257 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.03■□□□□ 0.8
CBX4O00257 HTR7P1-201ENST00000538670 1336 ntBASIC20.03■□□□□ 0.8
CBX4O00257 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
CBX4O00257 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CBX4O00257 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CBX4O00257 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CBX4O00257 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC20.03■□□□□ 0.8
CBX4O00257 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC20.03■□□□□ 0.8
CBX4O00257 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CBX4O00257 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.03■□□□□ 0.8
CBX4O00257 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
CBX4O00257 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC20.03■□□□□ 0.8
CBX4O00257 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CBX4O00257 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.03■□□□□ 0.8
CBX4O00257 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.03■□□□□ 0.8
CBX4O00257 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.03■□□□□ 0.8
CBX4O00257 RARRES2P10-201ENST00000564312 460 ntBASIC20.03■□□□□ 0.8
CBX4O00257 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CBX4O00257 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.03■□□□□ 0.8
CBX4O00257 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.03■□□□□ 0.8
CBX4O00257 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CBX4O00257 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
CBX4O00257 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CBX4O00257 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CBX4O00257 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
CBX4O00257 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CBX4O00257 AL135905.2-201ENST00000584934 1404 ntBASIC20.02■□□□□ 0.8
CBX4O00257 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
CBX4O00257 TMEM179-206ENST00000616017 1645 ntBASIC20.02■□□□□ 0.8
CBX4O00257 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CBX4O00257 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CBX4O00257 AC211429.1-201ENST00000415277 523 ntBASIC20.02■□□□□ 0.8
CBX4O00257 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.02■□□□□ 0.8
CBX4O00257 TUBB8P6-201ENST00000436895 1288 ntBASIC20.02■□□□□ 0.8
CBX4O00257 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CBX4O00257 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC20.02■□□□□ 0.8
CBX4O00257 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
CBX4O00257 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CBX4O00257 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CBX4O00257 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CBX4O00257 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.02■□□□□ 0.8
CBX4O00257 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
CBX4O00257 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
CBX4O00257 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
CBX4O00257 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.02■□□□□ 0.79
CBX4O00257 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC20.02■□□□□ 0.79
CBX4O00257 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.02■□□□□ 0.79
CBX4O00257 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CBX4O00257 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CBX4O00257 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CBX4O00257 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CBX4O00257 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC20.02■□□□□ 0.79
CBX4O00257 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CBX4O00257 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CBX4O00257 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.01■□□□□ 0.79
CBX4O00257 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
CBX4O00257 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.01■□□□□ 0.79
CBX4O00257 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.01■□□□□ 0.79
CBX4O00257 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
CBX4O00257 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CBX4O00257 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
CBX4O00257 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CBX4O00257 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
CBX4O00257 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CBX4O00257 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CBX4O00257 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CBX4O00257 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
CBX4O00257 RPS2P55-201ENST00000397318 883 ntBASIC20.01■□□□□ 0.79
CBX4O00257 AC107956.1-201ENST00000494359 873 ntBASIC20.01■□□□□ 0.79
CBX4O00257 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC20.01■□□□□ 0.79
CBX4O00257 KRT18P16-201ENST00000510337 1294 ntBASIC20.01■□□□□ 0.79
CBX4O00257 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
CBX4O00257 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC20.01■□□□□ 0.79
CBX4O00257 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CBX4O00257 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CBX4O00257 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.01■□□□□ 0.79
CBX4O00257 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC20.01■□□□□ 0.79
CBX4O00257 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.01■□□□□ 0.79
CBX4O00257 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CBX4O00257 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CBX4O00257 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CBX4O00257 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms