Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.61■□□□□ 0.57
PDLIM1O00151 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PDLIM1O00151 STK25-205ENST00000405883 1904 ntTSL 2 BASIC18.61■□□□□ 0.57
PDLIM1O00151 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PDLIM1O00151 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.6■□□□□ 0.57
PDLIM1O00151 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.6■□□□□ 0.57
PDLIM1O00151 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
PDLIM1O00151 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.6■□□□□ 0.57
PDLIM1O00151 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
PDLIM1O00151 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.6■□□□□ 0.57
PDLIM1O00151 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
PDLIM1O00151 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.6■□□□□ 0.57
PDLIM1O00151 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PDLIM1O00151 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PDLIM1O00151 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PDLIM1O00151 AC137761.2-201ENST00000561729 223 ntBASIC18.6■□□□□ 0.57
PDLIM1O00151 AC145350.3-201ENST00000569033 163 ntBASIC18.6■□□□□ 0.57
PDLIM1O00151 TFG-210ENST00000620299 1289 ntTSL 5 BASIC18.6■□□□□ 0.57
PDLIM1O00151 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
PDLIM1O00151 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PDLIM1O00151 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
PDLIM1O00151 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PDLIM1O00151 CD37-204ENST00000535669 1674 ntTSL 2 BASIC18.6■□□□□ 0.57
PDLIM1O00151 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PDLIM1O00151 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PDLIM1O00151 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PDLIM1O00151 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PDLIM1O00151 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PDLIM1O00151 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PDLIM1O00151 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
PDLIM1O00151 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PDLIM1O00151 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PDLIM1O00151 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.59■□□□□ 0.57
PDLIM1O00151 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.59■□□□□ 0.57
PDLIM1O00151 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PDLIM1O00151 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PDLIM1O00151 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC18.59■□□□□ 0.57
PDLIM1O00151 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC18.59■□□□□ 0.57
PDLIM1O00151 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PDLIM1O00151 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC18.59■□□□□ 0.57
PDLIM1O00151 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.59■□□□□ 0.57
PDLIM1O00151 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.59■□□□□ 0.57
PDLIM1O00151 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.59■□□□□ 0.57
PDLIM1O00151 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PDLIM1O00151 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.59■□□□□ 0.57
PDLIM1O00151 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.59■□□□□ 0.57
PDLIM1O00151 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
PDLIM1O00151 KRT8P36-201ENST00000489121 1440 ntBASIC18.58■□□□□ 0.57
PDLIM1O00151 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
PDLIM1O00151 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
PDLIM1O00151 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC18.58■□□□□ 0.57
PDLIM1O00151 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
PDLIM1O00151 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
PDLIM1O00151 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.58■□□□□ 0.57
PDLIM1O00151 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PDLIM1O00151 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
PDLIM1O00151 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
PDLIM1O00151 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC18.58■□□□□ 0.57
PDLIM1O00151 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PDLIM1O00151 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
PDLIM1O00151 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.58■□□□□ 0.57
PDLIM1O00151 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PDLIM1O00151 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PDLIM1O00151 AC245052.3-201ENST00000450182 901 ntBASIC18.58■□□□□ 0.56
PDLIM1O00151 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PDLIM1O00151 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC18.58■□□□□ 0.56
PDLIM1O00151 KRT18P20-201ENST00000548986 1279 ntBASIC18.58■□□□□ 0.56
PDLIM1O00151 AL137784.2-201ENST00000607332 1000 ntBASIC18.58■□□□□ 0.56
PDLIM1O00151 AC008175.2-201ENST00000612840 297 ntBASIC18.58■□□□□ 0.56
PDLIM1O00151 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PDLIM1O00151 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
PDLIM1O00151 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PDLIM1O00151 LINC01465-201ENST00000408887 1940 ntBASIC18.58■□□□□ 0.56
PDLIM1O00151 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.58■□□□□ 0.56
PDLIM1O00151 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PDLIM1O00151 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PDLIM1O00151 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PDLIM1O00151 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
PDLIM1O00151 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
PDLIM1O00151 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
PDLIM1O00151 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.57■□□□□ 0.56
PDLIM1O00151 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.57■□□□□ 0.56
PDLIM1O00151 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PDLIM1O00151 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.57■□□□□ 0.56
PDLIM1O00151 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PDLIM1O00151 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PDLIM1O00151 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
PDLIM1O00151 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PDLIM1O00151 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PDLIM1O00151 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
PDLIM1O00151 POU5F1P4-201ENST00000413175 1085 ntBASIC18.57■□□□□ 0.56
PDLIM1O00151 KRT18P11-201ENST00000435214 1283 ntBASIC18.57■□□□□ 0.56
PDLIM1O00151 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC18.57■□□□□ 0.56
PDLIM1O00151 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC18.57■□□□□ 0.56
PDLIM1O00151 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC18.57■□□□□ 0.56
PDLIM1O00151 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PDLIM1O00151 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
PDLIM1O00151 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.57■□□□□ 0.56
PDLIM1O00151 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
PDLIM1O00151 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms