Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TMX2-CTNND1H3BSU7 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.24■□□□□ 0.67
TMX2-CTNND1H3BSU7 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TMX2-CTNND1H3BSU7 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TMX2-CTNND1H3BSU7 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TMX2-CTNND1H3BSU7 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TMX2-CTNND1H3BSU7 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC19.24■□□□□ 0.67
TMX2-CTNND1H3BSU7 AP003071.4-201ENST00000562276 1284 ntBASIC19.24■□□□□ 0.67
TMX2-CTNND1H3BSU7 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC19.24■□□□□ 0.67
TMX2-CTNND1H3BSU7 AC073195.1-201ENST00000607241 877 ntBASIC19.24■□□□□ 0.67
TMX2-CTNND1H3BSU7 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TMX2-CTNND1H3BSU7 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC19.24■□□□□ 0.67
TMX2-CTNND1H3BSU7 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.24■□□□□ 0.67
TMX2-CTNND1H3BSU7 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC19.24■□□□□ 0.67
TMX2-CTNND1H3BSU7 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TMX2-CTNND1H3BSU7 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TMX2-CTNND1H3BSU7 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TMX2-CTNND1H3BSU7 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
TMX2-CTNND1H3BSU7 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.23■□□□□ 0.67
TMX2-CTNND1H3BSU7 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.23■□□□□ 0.67
TMX2-CTNND1H3BSU7 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
TMX2-CTNND1H3BSU7 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TMX2-CTNND1H3BSU7 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.23■□□□□ 0.67
TMX2-CTNND1H3BSU7 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
TMX2-CTNND1H3BSU7 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
TMX2-CTNND1H3BSU7 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TMX2-CTNND1H3BSU7 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
TMX2-CTNND1H3BSU7 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
TMX2-CTNND1H3BSU7 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC19.23■□□□□ 0.67
TMX2-CTNND1H3BSU7 CD177P1-201ENST00000606252 935 ntBASIC19.23■□□□□ 0.67
TMX2-CTNND1H3BSU7 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
TMX2-CTNND1H3BSU7 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TMX2-CTNND1H3BSU7 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TMX2-CTNND1H3BSU7 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
TMX2-CTNND1H3BSU7 AC026471.1-201ENST00000564629 3026 ntBASIC19.23■□□□□ 0.67
TMX2-CTNND1H3BSU7 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TMX2-CTNND1H3BSU7 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.23■□□□□ 0.67
TMX2-CTNND1H3BSU7 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TMX2-CTNND1H3BSU7 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
TMX2-CTNND1H3BSU7 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.23■□□□□ 0.67
TMX2-CTNND1H3BSU7 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
TMX2-CTNND1H3BSU7 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.23■□□□□ 0.67
TMX2-CTNND1H3BSU7 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TMX2-CTNND1H3BSU7 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TMX2-CTNND1H3BSU7 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
TMX2-CTNND1H3BSU7 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TMX2-CTNND1H3BSU7 AC112907.3-201ENST00000577781 2400 ntBASIC19.22■□□□□ 0.67
TMX2-CTNND1H3BSU7 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TMX2-CTNND1H3BSU7 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.22■□□□□ 0.67
TMX2-CTNND1H3BSU7 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TMX2-CTNND1H3BSU7 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
TMX2-CTNND1H3BSU7 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.22■□□□□ 0.67
TMX2-CTNND1H3BSU7 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TMX2-CTNND1H3BSU7 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
TMX2-CTNND1H3BSU7 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
TMX2-CTNND1H3BSU7 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC19.22■□□□□ 0.67
TMX2-CTNND1H3BSU7 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC19.22■□□□□ 0.67
TMX2-CTNND1H3BSU7 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC19.22■□□□□ 0.67
TMX2-CTNND1H3BSU7 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC19.22■□□□□ 0.67
TMX2-CTNND1H3BSU7 AC012306.2-201ENST00000609350 630 ntBASIC19.22■□□□□ 0.67
TMX2-CTNND1H3BSU7 Six3os1_6.1-201ENST00000620790 196 ntBASIC19.22■□□□□ 0.67
TMX2-CTNND1H3BSU7 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC19.22■□□□□ 0.67
TMX2-CTNND1H3BSU7 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC19.22■□□□□ 0.67
TMX2-CTNND1H3BSU7 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
TMX2-CTNND1H3BSU7 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TMX2-CTNND1H3BSU7 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TMX2-CTNND1H3BSU7 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
TMX2-CTNND1H3BSU7 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TMX2-CTNND1H3BSU7 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC19.22■□□□□ 0.67
TMX2-CTNND1H3BSU7 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TMX2-CTNND1H3BSU7 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
TMX2-CTNND1H3BSU7 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.21■□□□□ 0.67
TMX2-CTNND1H3BSU7 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TMX2-CTNND1H3BSU7 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.21■□□□□ 0.67
TMX2-CTNND1H3BSU7 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
TMX2-CTNND1H3BSU7 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.21■□□□□ 0.67
TMX2-CTNND1H3BSU7 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
TMX2-CTNND1H3BSU7 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
TMX2-CTNND1H3BSU7 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
TMX2-CTNND1H3BSU7 MMP23A-201ENST00000234610 1017 ntBASIC19.21■□□□□ 0.67
TMX2-CTNND1H3BSU7 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC19.21■□□□□ 0.67
TMX2-CTNND1H3BSU7 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TMX2-CTNND1H3BSU7 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TMX2-CTNND1H3BSU7 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TMX2-CTNND1H3BSU7 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
TMX2-CTNND1H3BSU7 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC19.21■□□□□ 0.67
TMX2-CTNND1H3BSU7 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC19.21■□□□□ 0.67
TMX2-CTNND1H3BSU7 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
TMX2-CTNND1H3BSU7 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC19.21■□□□□ 0.67
TMX2-CTNND1H3BSU7 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TMX2-CTNND1H3BSU7 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC19.21■□□□□ 0.67
TMX2-CTNND1H3BSU7 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TMX2-CTNND1H3BSU7 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.21■□□□□ 0.67
TMX2-CTNND1H3BSU7 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TMX2-CTNND1H3BSU7 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
TMX2-CTNND1H3BSU7 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
TMX2-CTNND1H3BSU7 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TMX2-CTNND1H3BSU7 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TMX2-CTNND1H3BSU7 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.21■□□□□ 0.67
TMX2-CTNND1H3BSU7 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms