Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL6A5A8TX70 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL6A5A8TX70 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
COL6A5A8TX70 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC15.29■□□□□ 0.04
COL6A5A8TX70 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL6A5A8TX70 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL6A5A8TX70 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
COL6A5A8TX70 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC15.29■□□□□ 0.04
COL6A5A8TX70 CIB2-208ENST00000560618 804 ntTSL 2 BASIC15.29■□□□□ 0.04
COL6A5A8TX70 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL6A5A8TX70 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL6A5A8TX70 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC15.29■□□□□ 0.04
COL6A5A8TX70 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL6A5A8TX70 GOLGA6L3-201ENST00000507199 1679 ntBASIC15.28■□□□□ 0.04
COL6A5A8TX70 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
COL6A5A8TX70 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL6A5A8TX70 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL6A5A8TX70 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL6A5A8TX70 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL6A5A8TX70 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC15.28■□□□□ 0.04
COL6A5A8TX70 FABP5-202ENST00000396359 986 ntTSL 5 BASIC15.28■□□□□ 0.04
COL6A5A8TX70 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
COL6A5A8TX70 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC15.28■□□□□ 0.04
COL6A5A8TX70 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC15.28■□□□□ 0.04
COL6A5A8TX70 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
COL6A5A8TX70 LINC01711-201ENST00000598340 967 ntBASIC15.28■□□□□ 0.04
COL6A5A8TX70 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL6A5A8TX70 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL6A5A8TX70 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL6A5A8TX70 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL6A5A8TX70 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC15.28■□□□□ 0.04
COL6A5A8TX70 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL6A5A8TX70 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL6A5A8TX70 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC15.28■□□□□ 0.04
COL6A5A8TX70 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
COL6A5A8TX70 PGAM5P1-201ENST00000518923 814 ntBASIC15.28■□□□□ 0.04
COL6A5A8TX70 AP003041.3-201ENST00000527151 707 ntBASIC15.28■□□□□ 0.04
COL6A5A8TX70 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC15.28■□□□□ 0.04
COL6A5A8TX70 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL6A5A8TX70 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL6A5A8TX70 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
COL6A5A8TX70 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC15.28■□□□□ 0.04
COL6A5A8TX70 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL6A5A8TX70 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC15.27■□□□□ 0.04
COL6A5A8TX70 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
COL6A5A8TX70 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
COL6A5A8TX70 HLA-G-202ENST00000376815 851 ntBASIC15.27■□□□□ 0.04
COL6A5A8TX70 CALM3-202ENST00000391918 702 ntTSL 2 BASIC15.27■□□□□ 0.04
COL6A5A8TX70 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL6A5A8TX70 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC15.27■□□□□ 0.04
COL6A5A8TX70 AL121772.3-201ENST00000610840 674 ntBASIC15.27■□□□□ 0.04
COL6A5A8TX70 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC15.27■□□□□ 0.04
COL6A5A8TX70 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL6A5A8TX70 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL6A5A8TX70 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
COL6A5A8TX70 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
COL6A5A8TX70 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
COL6A5A8TX70 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
COL6A5A8TX70 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC15.27■□□□□ 0.03
COL6A5A8TX70 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC15.27■□□□□ 0.03
COL6A5A8TX70 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC15.27■□□□□ 0.03
COL6A5A8TX70 TLE1-202ENST00000376484 666 ntTSL 3 BASIC15.27■□□□□ 0.03
COL6A5A8TX70 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL6A5A8TX70 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL6A5A8TX70 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL6A5A8TX70 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC15.26■□□□□ 0.03
COL6A5A8TX70 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC15.26■□□□□ 0.03
COL6A5A8TX70 MIR940-201ENST00000401276 94 ntBASIC15.26■□□□□ 0.03
COL6A5A8TX70 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC15.26■□□□□ 0.03
COL6A5A8TX70 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC15.26■□□□□ 0.03
COL6A5A8TX70 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
COL6A5A8TX70 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC15.26■□□□□ 0.03
COL6A5A8TX70 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL6A5A8TX70 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL6A5A8TX70 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC15.26■□□□□ 0.03
COL6A5A8TX70 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL6A5A8TX70 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL6A5A8TX70 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC15.26■□□□□ 0.03
COL6A5A8TX70 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL6A5A8TX70 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL6A5A8TX70 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL6A5A8TX70 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL6A5A8TX70 PHB2-202ENST00000440277 996 ntTSL 5 BASIC15.25■□□□□ 0.03
COL6A5A8TX70 RASA4DP-201ENST00000460726 1199 ntBASIC15.25■□□□□ 0.03
COL6A5A8TX70 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC15.25■□□□□ 0.03
COL6A5A8TX70 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL6A5A8TX70 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
COL6A5A8TX70 REXO1L6P-202ENST00000619970 1078 ntBASIC15.25■□□□□ 0.03
COL6A5A8TX70 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC15.25■□□□□ 0.03
COL6A5A8TX70 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC15.25■□□□□ 0.03
COL6A5A8TX70 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL6A5A8TX70 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL6A5A8TX70 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC15.25■□□□□ 0.03
COL6A5A8TX70 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC15.25■□□□□ 0.03
COL6A5A8TX70 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL6A5A8TX70 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC15.25■□□□□ 0.03
COL6A5A8TX70 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC15.25■□□□□ 0.03
COL6A5A8TX70 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC15.25■□□□□ 0.03
COL6A5A8TX70 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL6A5A8TX70 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms