Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 FTO-215ENST00000636491 1676 ntTSL 5 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 AMELX-201ENST00000348912 737 ntTSL 5 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 SDHAF3-201ENST00000360382 731 ntTSL 2 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 AL136131.1-201ENST00000406079 803 ntBASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 TNPO1P1-201ENST00000423641 1138 ntBASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 AL390023.1-201ENST00000428836 262 ntBASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 AL669831.5-205ENST00000429505 441 ntTSL 3 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 AL161793.1-201ENST00000435021 445 ntTSL 3 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 AL929288.2-201ENST00000446368 407 ntBASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 RHEBP2-201ENST00000450289 600 ntBASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 RANP1-206ENST00000455094 651 ntBASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 RNU7-27P-201ENST00000459281 62 ntBASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 AC110749.1-201ENST00000462007 357 ntBASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 AL117692.1-201ENST00000494283 713 ntBASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 HMGN1P16-201ENST00000508308 283 ntBASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 OR5H4P-201ENST00000510851 923 ntBASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 AP003080.1-202ENST00000526526 915 ntBASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 ERP27-202ENST00000540097 993 ntTSL 2 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 YWHABP2-201ENST00000540201 713 ntBASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 POLR2KP1-201ENST00000553226 168 ntBASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 RN7SL230P-201ENST00000580835 303 ntBASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 NBR2-204ENST00000587322 63 ntBASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 EIF1P6-201ENST00000600054 334 ntBASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 AC068790.7-201ENST00000602347 528 ntBASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 OSTC-205ENST00000613215 876 ntTSL 2 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 AC015574.1-202ENST00000616588 456 ntTSL 5 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 AL356274.1-201ENST00000617064 410 ntBASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 AC005899.7-201ENST00000618199 588 ntBASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 AC087821.2-201ENST00000637086 450 ntBASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 LINC02341-202ENST00000637462 1295 ntTSL 5 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 AC103706.2-201ENST00000638080 240 ntBASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 5S_rRNA.29-201ENST00000641250 107 ntBASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC6.34□□□□□ -1.4
TRIM39Q9HCM9 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC6.34□□□□□ -1.4
TRIM39Q9HCM9 AL391261.1-201ENST00000555712 1479 ntBASIC6.34□□□□□ -1.4
TRIM39Q9HCM9 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC6.34□□□□□ -1.4
TRIM39Q9HCM9 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC6.34□□□□□ -1.4
TRIM39Q9HCM9 GYPA-214ENST00000641688 1764 ntAPPRIS ALT2 BASIC6.34□□□□□ -1.4
TRIM39Q9HCM9 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 EEF1A1P21-201ENST00000512363 1344 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 FAM32BP-201ENST00000344033 333 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 RFPL3S-201ENST00000382084 1117 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 LYPLA1P3-201ENST00000402650 695 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AL365203.2-201ENST00000423444 196 ntBASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 RPL6-202ENST00000424576 1074 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC6.33□□□□□ -1.4
TRIM39Q9HCM9 VN1R20P-201ENST00000425215 966 ntBASIC6.33□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 145.2 ms