Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
HMGB1P09429 GNL2P1-201ENST00000451274 2190 ntBASIC7.11□□□□□ -1.27
HMGB1P09429 RPA3-204ENST00000406109 434 ntTSL 3 BASIC7.11□□□□□ -1.27
HMGB1P09429 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC7.11□□□□□ -1.27
HMGB1P09429 AKR1B10P1-201ENST00000425765 942 ntBASIC7.11□□□□□ -1.27
HMGB1P09429 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC7.11□□□□□ -1.27
HMGB1P09429 TMX2P1-201ENST00000436507 708 ntBASIC7.11□□□□□ -1.27
HMGB1P09429 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC7.11□□□□□ -1.27
HMGB1P09429 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC7.11□□□□□ -1.27
HMGB1P09429 AL935212.3-201ENST00000450729 284 ntBASIC7.11□□□□□ -1.27
HMGB1P09429 RPL23AP71-201ENST00000470966 469 ntBASIC7.11□□□□□ -1.27
HMGB1P09429 TRBV5-2-201ENST00000489095 273 ntBASIC7.11□□□□□ -1.27
HMGB1P09429 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC7.11□□□□□ -1.27
HMGB1P09429 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC7.11□□□□□ -1.27
HMGB1P09429 AC090568.1-201ENST00000509499 856 ntBASIC7.11□□□□□ -1.27
HMGB1P09429 PRMT5P1-201ENST00000514351 598 ntBASIC7.11□□□□□ -1.27
HMGB1P09429 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC7.11□□□□□ -1.27
HMGB1P09429 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
HMGB1P09429 FAU-203ENST00000525297 355 ntTSL 5 BASIC7.11□□□□□ -1.27
HMGB1P09429 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC7.11□□□□□ -1.27
HMGB1P09429 AL138974.1-201ENST00000551227 741 ntTSL 5 BASIC7.11□□□□□ -1.27
HMGB1P09429 Metazoa_SRP.38-201ENST00000615981 254 ntBASIC7.11□□□□□ -1.27
HMGB1P09429 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC7.11□□□□□ -1.27
HMGB1P09429 AL163051.2-201ENST00000618976 735 ntBASIC7.11□□□□□ -1.27
HMGB1P09429 AC008691.1-209ENST00000642094 814 ntBASIC7.11□□□□□ -1.27
HMGB1P09429 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC7.11□□□□□ -1.27
HMGB1P09429 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC7.11□□□□□ -1.27
HMGB1P09429 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC7.11□□□□□ -1.27
HMGB1P09429 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
HMGB1P09429 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC7.11□□□□□ -1.27
HMGB1P09429 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC7.11□□□□□ -1.27
HMGB1P09429 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
HMGB1P09429 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
HMGB1P09429 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC7.1□□□□□ -1.27
HMGB1P09429 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC7.1□□□□□ -1.27
HMGB1P09429 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC7.1□□□□□ -1.27
HMGB1P09429 RASSF8-216ENST00000615708 1328 ntTSL 5 BASIC7.1□□□□□ -1.27
HMGB1P09429 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
HMGB1P09429 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
HMGB1P09429 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC7.1□□□□□ -1.27
HMGB1P09429 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
HMGB1P09429 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC7.1□□□□□ -1.27
HMGB1P09429 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
HMGB1P09429 AC073136.2-201ENST00000417282 849 ntBASIC7.1□□□□□ -1.27
HMGB1P09429 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC7.1□□□□□ -1.27
HMGB1P09429 AC096669.1-201ENST00000422203 648 ntTSL 5 BASIC7.1□□□□□ -1.27
HMGB1P09429 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC7.1□□□□□ -1.27
HMGB1P09429 AC023141.3-201ENST00000436698 278 ntBASIC7.1□□□□□ -1.27
HMGB1P09429 TIMM8BP2-201ENST00000445940 251 ntBASIC7.1□□□□□ -1.27
HMGB1P09429 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC7.1□□□□□ -1.27
HMGB1P09429 AC104164.1-201ENST00000460282 590 ntBASIC7.1□□□□□ -1.27
HMGB1P09429 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC7.1□□□□□ -1.27
HMGB1P09429 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC7.1□□□□□ -1.27
HMGB1P09429 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC7.1□□□□□ -1.27
HMGB1P09429 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC7.1□□□□□ -1.27
HMGB1P09429 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC7.1□□□□□ -1.27
HMGB1P09429 LACTB2-AS1-203ENST00000518553 817 ntTSL 5 BASIC7.1□□□□□ -1.27
HMGB1P09429 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC7.1□□□□□ -1.27
HMGB1P09429 NPM1P6-201ENST00000521088 871 ntBASIC7.1□□□□□ -1.27
HMGB1P09429 IGKV1OR22-1-201ENST00000521497 360 ntBASIC7.1□□□□□ -1.27
HMGB1P09429 BUD31P1-201ENST00000521828 359 ntBASIC7.1□□□□□ -1.27
HMGB1P09429 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC7.1□□□□□ -1.27
HMGB1P09429 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
HMGB1P09429 OR4U1P-201ENST00000554958 912 ntBASIC7.1□□□□□ -1.27
HMGB1P09429 AC093510.2-201ENST00000562820 896 ntBASIC7.1□□□□□ -1.27
HMGB1P09429 AC007346.1-201ENST00000569208 867 ntBASIC7.1□□□□□ -1.27
HMGB1P09429 SEPT4-AS1-202ENST00000580589 653 ntTSL 3 BASIC7.1□□□□□ -1.27
HMGB1P09429 APOC2-205ENST00000592257 444 ntTSL 3 BASIC7.1□□□□□ -1.27
HMGB1P09429 AC017076.1-201ENST00000607613 578 ntBASIC7.1□□□□□ -1.27
HMGB1P09429 MIR6721-201ENST00000617181 87 ntBASIC7.1□□□□□ -1.27
HMGB1P09429 AC073488.3-201ENST00000631611 778 ntBASIC7.1□□□□□ -1.27
HMGB1P09429 AL590396.2-201ENST00000636511 1041 ntBASIC7.1□□□□□ -1.27
HMGB1P09429 CASC19-274ENST00000642018 970 ntBASIC7.1□□□□□ -1.27
HMGB1P09429 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
HMGB1P09429 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC7.1□□□□□ -1.27
HMGB1P09429 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
HMGB1P09429 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
HMGB1P09429 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC7.1□□□□□ -1.27
HMGB1P09429 DMD-228ENST00000541735 7080 ntTSL 5 BASIC7.1□□□□□ -1.27
HMGB1P09429 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC7.1□□□□□ -1.27
HMGB1P09429 HSPA8P14-201ENST00000552265 1805 ntBASIC7.1□□□□□ -1.27
HMGB1P09429 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC7.1□□□□□ -1.27
HMGB1P09429 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC7.1□□□□□ -1.27
HMGB1P09429 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC7.09□□□□□ -1.27
HMGB1P09429 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC7.09□□□□□ -1.27
HMGB1P09429 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC7.09□□□□□ -1.27
HMGB1P09429 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
HMGB1P09429 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC7.09□□□□□ -1.27
HMGB1P09429 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
HMGB1P09429 AC130304.1-201ENST00000622942 2385 ntBASIC7.09□□□□□ -1.27
HMGB1P09429 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC7.09□□□□□ -1.27
HMGB1P09429 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
HMGB1P09429 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
HMGB1P09429 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC7.09□□□□□ -1.27
HMGB1P09429 RNA5SP27-201ENST00000363839 119 ntBASIC7.09□□□□□ -1.27
HMGB1P09429 RNA5SP211-201ENST00000365516 117 ntBASIC7.09□□□□□ -1.27
HMGB1P09429 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC7.09□□□□□ -1.27
HMGB1P09429 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
HMGB1P09429 OOSP1-201ENST00000398992 1270 ntBASIC7.09□□□□□ -1.27
HMGB1P09429 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms