Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RN7SL629P-201ENST00000489622 285 ntBASIC6.22□□□□□ -1.41
USP39Q53GS9 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
USP39Q53GS9 RN7SL193P-201ENST00000491708 276 ntBASIC6.22□□□□□ -1.41
USP39Q53GS9 MTCYBP37-201ENST00000510642 1133 ntBASIC6.22□□□□□ -1.41
USP39Q53GS9 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
USP39Q53GS9 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC6.22□□□□□ -1.41
USP39Q53GS9 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC6.22□□□□□ -1.41
USP39Q53GS9 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC6.22□□□□□ -1.41
USP39Q53GS9 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC6.22□□□□□ -1.41
USP39Q53GS9 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC6.22□□□□□ -1.41
USP39Q53GS9 AC091078.2-201ENST00000557145 559 ntBASIC6.22□□□□□ -1.41
USP39Q53GS9 AC090888.1-201ENST00000561335 1141 ntBASIC6.22□□□□□ -1.41
USP39Q53GS9 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC6.22□□□□□ -1.41
USP39Q53GS9 ZNF322P1-201ENST00000568013 1209 ntBASIC6.22□□□□□ -1.41
USP39Q53GS9 AC124856.1-201ENST00000600819 896 ntBASIC6.22□□□□□ -1.41
USP39Q53GS9 AC087468.1-201ENST00000604365 630 ntBASIC6.22□□□□□ -1.41
USP39Q53GS9 AC025588.2-201ENST00000604851 466 ntBASIC6.22□□□□□ -1.41
USP39Q53GS9 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
USP39Q53GS9 AC022106.1-201ENST00000612834 766 ntBASIC6.22□□□□□ -1.41
USP39Q53GS9 FRG1EP-201ENST00000634469 770 ntBASIC6.22□□□□□ -1.41
USP39Q53GS9 AP000550.3-201ENST00000637734 379 ntBASIC6.22□□□□□ -1.41
USP39Q53GS9 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC6.22□□□□□ -1.41
USP39Q53GS9 DPY19L1P1-201ENST00000417811 2594 ntBASIC6.22□□□□□ -1.41
USP39Q53GS9 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC6.22□□□□□ -1.41
USP39Q53GS9 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC6.22□□□□□ -1.41
USP39Q53GS9 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
USP39Q53GS9 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC6.22□□□□□ -1.41
USP39Q53GS9 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC6.22□□□□□ -1.41
USP39Q53GS9 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC6.22□□□□□ -1.41
USP39Q53GS9 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
USP39Q53GS9 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
USP39Q53GS9 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
USP39Q53GS9 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
USP39Q53GS9 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
USP39Q53GS9 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC6.21□□□□□ -1.41
USP39Q53GS9 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
USP39Q53GS9 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC6.21□□□□□ -1.41
USP39Q53GS9 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
USP39Q53GS9 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC6.21□□□□□ -1.41
USP39Q53GS9 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC6.21□□□□□ -1.41
USP39Q53GS9 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
USP39Q53GS9 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
USP39Q53GS9 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
USP39Q53GS9 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC6.21□□□□□ -1.42
USP39Q53GS9 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
USP39Q53GS9 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
USP39Q53GS9 AC017079.1-201ENST00000333650 415 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 TMSB4XP2-201ENST00000335179 210 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 SNORD8-201ENST00000363915 110 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
USP39Q53GS9 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC6.21□□□□□ -1.42
USP39Q53GS9 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC6.21□□□□□ -1.42
USP39Q53GS9 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
USP39Q53GS9 SNORD116-9-201ENST00000384000 95 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 SNORD116-3-201ENST00000384287 95 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 SNORD116-7-201ENST00000384404 95 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 SNORD116-5-201ENST00000384462 95 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 MIR143-201ENST00000385300 106 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 RPS3AP2-201ENST00000407190 754 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 MIR1203-201ENST00000408812 85 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC6.21□□□□□ -1.42
USP39Q53GS9 RN7SKP161-201ENST00000411110 305 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 RN7SKP293-201ENST00000411389 296 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC6.21□□□□□ -1.42
USP39Q53GS9 PTP4A1P7-201ENST00000423476 514 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC6.21□□□□□ -1.42
USP39Q53GS9 USP9YP24-201ENST00000434374 697 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 AL161793.1-201ENST00000435021 445 ntTSL 3 BASIC6.21□□□□□ -1.42
USP39Q53GS9 TUBB4BP6-201ENST00000437576 479 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC6.21□□□□□ -1.42
USP39Q53GS9 AL513321.1-201ENST00000441175 761 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC6.21□□□□□ -1.42
USP39Q53GS9 USP9YP17-201ENST00000444617 696 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
USP39Q53GS9 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC6.21□□□□□ -1.42
USP39Q53GS9 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC6.21□□□□□ -1.42
USP39Q53GS9 YWHAEP1-201ENST00000453697 763 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 VPS25P1-201ENST00000455691 508 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 RPSAP39-201ENST00000467439 883 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 RN7SL165P-201ENST00000477476 291 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC6.21□□□□□ -1.42
USP39Q53GS9 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC6.21□□□□□ -1.42
USP39Q53GS9 RNU6-276P-201ENST00000516114 96 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC6.21□□□□□ -1.42
USP39Q53GS9 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC6.21□□□□□ -1.42
USP39Q53GS9 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC6.21□□□□□ -1.42
USP39Q53GS9 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC6.21□□□□□ -1.42
USP39Q53GS9 AP001858.2-201ENST00000536213 601 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC6.21□□□□□ -1.42
USP39Q53GS9 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC6.21□□□□□ -1.42
USP39Q53GS9 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
USP39Q53GS9 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
USP39Q53GS9 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC6.21□□□□□ -1.42
USP39Q53GS9 AP005119.1-201ENST00000580956 292 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC6.21□□□□□ -1.42
USP39Q53GS9 AC013244.1-201ENST00000604279 193 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC6.21□□□□□ -1.42
USP39Q53GS9 AP005229.2-201ENST00000609980 697 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 RN7SL787P-201ENST00000613000 284 ntBASIC6.21□□□□□ -1.42
USP39Q53GS9 AL512624.1-201ENST00000613638 469 ntBASIC6.21□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms