Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AC009227.2-201ENST00000432599 511 ntTSL 3 BASIC5.3□□□□□ -1.56
SHOX2O60902 EEF1B2P3-201ENST00000447718 678 ntBASIC5.3□□□□□ -1.56
SHOX2O60902 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SHOX2O60902 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC5.3□□□□□ -1.56
SHOX2O60902 RN7SL362P-201ENST00000494228 267 ntBASIC5.3□□□□□ -1.56
SHOX2O60902 AC021146.3-201ENST00000511911 260 ntBASIC5.3□□□□□ -1.56
SHOX2O60902 TCP11X3P-202ENST00000514289 1254 ntBASIC5.3□□□□□ -1.56
SHOX2O60902 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SHOX2O60902 RNA5SP249-201ENST00000516127 99 ntBASIC5.3□□□□□ -1.56
SHOX2O60902 OR10D4P-201ENST00000525892 951 ntBASIC5.3□□□□□ -1.56
SHOX2O60902 AC006530.1-201ENST00000555980 571 ntBASIC5.3□□□□□ -1.56
SHOX2O60902 AC121758.1-202ENST00000556917 658 ntBASIC5.3□□□□□ -1.56
SHOX2O60902 AC145285.4-201ENST00000568183 540 ntTSL 3 BASIC5.3□□□□□ -1.56
SHOX2O60902 AP005403.1-201ENST00000579720 229 ntBASIC5.3□□□□□ -1.56
SHOX2O60902 AC005244.1-201ENST00000582566 339 ntBASIC5.3□□□□□ -1.56
SHOX2O60902 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC5.3□□□□□ -1.56
SHOX2O60902 TEX41-218ENST00000596540 882 ntTSL 5 BASIC5.3□□□□□ -1.56
SHOX2O60902 uc_338.18-201ENST00000615451 175 ntBASIC5.3□□□□□ -1.56
SHOX2O60902 AC073592.6-201ENST00000624271 415 ntBASIC5.3□□□□□ -1.56
SHOX2O60902 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.3□□□□□ -1.56
SHOX2O60902 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC5.3□□□□□ -1.56
SHOX2O60902 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.3□□□□□ -1.56
SHOX2O60902 HSPA8P18-201ENST00000439846 1928 ntBASIC5.3□□□□□ -1.56
SHOX2O60902 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC5.3□□□□□ -1.56
SHOX2O60902 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SHOX2O60902 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC5.3□□□□□ -1.56
SHOX2O60902 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SHOX2O60902 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC5.3□□□□□ -1.56
SHOX2O60902 CASC19-204ENST00000641001 2055 ntBASIC5.3□□□□□ -1.56
SHOX2O60902 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.3□□□□□ -1.56
SHOX2O60902 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
SHOX2O60902 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC5.3□□□□□ -1.56
SHOX2O60902 CASC19-221ENST00000641309 1382 ntBASIC5.29□□□□□ -1.56
SHOX2O60902 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SHOX2O60902 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
SHOX2O60902 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
SHOX2O60902 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC5.29□□□□□ -1.56
SHOX2O60902 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.29□□□□□ -1.56
SHOX2O60902 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SHOX2O60902 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.29□□□□□ -1.56
SHOX2O60902 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.29□□□□□ -1.56
SHOX2O60902 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SHOX2O60902 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SHOX2O60902 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SHOX2O60902 RNFT1P3-201ENST00000340898 1052 ntBASIC5.29□□□□□ -1.56
SHOX2O60902 IL6STP1-201ENST00000346911 1020 ntBASIC5.29□□□□□ -1.56
SHOX2O60902 RNU4-44P-201ENST00000363050 141 ntBASIC5.29□□□□□ -1.56
SHOX2O60902 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SHOX2O60902 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC5.29□□□□□ -1.56
SHOX2O60902 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.29□□□□□ -1.56
SHOX2O60902 AC108161.1-201ENST00000461060 402 ntBASIC5.29□□□□□ -1.56
SHOX2O60902 RPS3AP15-201ENST00000483874 781 ntBASIC5.29□□□□□ -1.56
SHOX2O60902 AC005412.2-201ENST00000492004 341 ntBASIC5.29□□□□□ -1.56
SHOX2O60902 RPEP1-201ENST00000504507 658 ntBASIC5.29□□□□□ -1.56
SHOX2O60902 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC5.29□□□□□ -1.56
SHOX2O60902 IGHVIII-2-1-201ENST00000518843 291 ntBASIC5.29□□□□□ -1.56
SHOX2O60902 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC5.29□□□□□ -1.56
SHOX2O60902 AC011270.1-201ENST00000558606 583 ntBASIC5.29□□□□□ -1.56
SHOX2O60902 AC092332.1-201ENST00000563684 829 ntBASIC5.29□□□□□ -1.56
SHOX2O60902 LINC01477-201ENST00000566101 1226 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SHOX2O60902 AC012146.2-201ENST00000576545 416 ntBASIC5.29□□□□□ -1.56
SHOX2O60902 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC5.29□□□□□ -1.56
SHOX2O60902 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC5.29□□□□□ -1.56
SHOX2O60902 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC5.29□□□□□ -1.56
SHOX2O60902 TAS2R6P-201ENST00000605022 826 ntBASIC5.29□□□□□ -1.56
SHOX2O60902 AL121890.2-201ENST00000617644 465 ntBASIC5.29□□□□□ -1.56
SHOX2O60902 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.29□□□□□ -1.56
SHOX2O60902 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.29□□□□□ -1.56
SHOX2O60902 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SHOX2O60902 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC5.29□□□□□ -1.56
SHOX2O60902 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
SHOX2O60902 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SHOX2O60902 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SHOX2O60902 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC5.28□□□□□ -1.56
SHOX2O60902 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SHOX2O60902 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SHOX2O60902 AC112198.2-201ENST00000426589 6996 ntBASIC5.28□□□□□ -1.56
SHOX2O60902 OR51H2P-202ENST00000641424 3046 ntBASIC5.28□□□□□ -1.56
SHOX2O60902 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
SHOX2O60902 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SHOX2O60902 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
SHOX2O60902 ODF3-202ENST00000342593 386 ntTSL 5 BASIC5.28□□□□□ -1.56
SHOX2O60902 SNORA64.1-201ENST00000362600 132 ntBASIC5.28□□□□□ -1.56
SHOX2O60902 RN7SKP104-201ENST00000362605 328 ntBASIC5.28□□□□□ -1.56
SHOX2O60902 RNA5SP223-201ENST00000365174 120 ntBASIC5.28□□□□□ -1.56
SHOX2O60902 FIG4-202ENST00000368941 791 ntTSL 3 BASIC5.28□□□□□ -1.56
SHOX2O60902 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
SHOX2O60902 OR2AT2P-201ENST00000413438 905 ntBASIC5.28□□□□□ -1.56
SHOX2O60902 NIPA2P1-201ENST00000426223 976 ntBASIC5.28□□□□□ -1.56
SHOX2O60902 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC5.28□□□□□ -1.56
SHOX2O60902 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC5.28□□□□□ -1.56
SHOX2O60902 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SHOX2O60902 AC005077.1-201ENST00000449226 375 ntBASIC5.28□□□□□ -1.56
SHOX2O60902 RHEBP2-201ENST00000450289 600 ntBASIC5.28□□□□□ -1.56
SHOX2O60902 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC5.28□□□□□ -1.56
SHOX2O60902 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
SHOX2O60902 SCARNA6.1-201ENST00000516989 238 ntBASIC5.28□□□□□ -1.56
SHOX2O60902 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC5.28□□□□□ -1.56
SHOX2O60902 LACTB2-AS1-203ENST00000518553 817 ntTSL 5 BASIC5.28□□□□□ -1.56
SHOX2O60902 AC134698.5-201ENST00000519444 336 ntBASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 260.3 ms