Protein–RNA interactions for Protein: Q96PZ7

CSMD1, CUB and sushi domain-containing protein 1, humanhuman

Predictions only

Length 3,565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1Q96PZ7 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CSMD1Q96PZ7 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC4.29□□□□□ -1.72
CSMD1Q96PZ7 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC4.29□□□□□ -1.72
CSMD1Q96PZ7 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
CSMD1Q96PZ7 TULP4-202ENST00000367097 11295 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CSMD1Q96PZ7 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
CSMD1Q96PZ7 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CSMD1Q96PZ7 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC4.29□□□□□ -1.72
CSMD1Q96PZ7 TXNP2-201ENST00000443918 295 ntBASIC4.29□□□□□ -1.72
CSMD1Q96PZ7 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC4.29□□□□□ -1.72
CSMD1Q96PZ7 OR7E128P-201ENST00000532736 1024 ntBASIC4.29□□□□□ -1.72
CSMD1Q96PZ7 XIST-210ENST00000602863 775 ntTSL 3 BASIC4.29□□□□□ -1.72
CSMD1Q96PZ7 AC020910.3-201ENST00000603701 874 ntBASIC4.29□□□□□ -1.72
CSMD1Q96PZ7 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CSMD1Q96PZ7 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CSMD1Q96PZ7 ZNF33A-204ENST00000458705 6084 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
CSMD1Q96PZ7 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
CSMD1Q96PZ7 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 LMO7-202ENST00000341547 7237 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 CYCSP34-201ENST00000458172 304 ntBASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 AK3P4-201ENST00000504283 583 ntBASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 AP003400.2-201ENST00000624036 666 ntBASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 AC073869.8-201ENST00000641806 335 ntBASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 NEK11-201ENST00000356918 1874 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 GPBP1-203ENST00000424459 4683 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 FAM13A-201ENST00000264344 5858 ntAPPRIS P2 TSL 5 BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 RAD17P1-201ENST00000418130 2042 ntBASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 PEG10-206ENST00000612941 6392 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 PEG10-209ENST00000617526 6392 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 SEC22B-201ENST00000578049 6922 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 RIPOR2-206ENST00000538035 5389 ntTSL 2 BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 RN7SKP106-201ENST00000410832 272 ntBASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 RPS3AP25-201ENST00000411660 793 ntBASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 RPL34P6-201ENST00000432390 345 ntBASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 MTND2P28-201ENST00000457540 1044 ntBASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 AL133372.1-201ENST00000493565 745 ntBASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 RN7SKP260-201ENST00000516907 149 ntBASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 AC012339.2-201ENST00000523996 453 ntBASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 AC027807.1-201ENST00000559921 996 ntBASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 AC021106.3-201ENST00000623925 531 ntBASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 CR381572.2-201ENST00000624852 397 ntBASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 RNA5SP196-201ENST00000625967 102 ntBASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 EYA4-201ENST00000355167 5692 ntTSL 5 BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 AC119674.1-213ENST00000641177 1386 ntBASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 THAP12P9-201ENST00000503971 2360 ntBASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 MSL3P1-202ENST00000440028 1468 ntBASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 SP1-202ENST00000426431 7603 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 OR2A42-202ENST00000641810 4946 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 AC109446.4-201ENST00000623235 2755 ntBASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 BX510359.2-201ENST00000417920 305 ntBASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 AC021106.1-201ENST00000509020 1058 ntBASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 HNRNPRP2-201ENST00000528421 743 ntBASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 AC004777.1-201ENST00000624317 287 ntBASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 EEF1A1P33-201ENST00000554413 1362 ntBASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC4.28□□□□□ -1.72
CSMD1Q96PZ7 KIF13A-203ENST00000378814 6924 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.73
CSMD1Q96PZ7 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.73
CSMD1Q96PZ7 AC016745.2-201ENST00000608834 3443 ntBASIC4.28□□□□□ -1.73
CSMD1Q96PZ7 NCKAP5-201ENST00000317721 7593 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
CSMD1Q96PZ7 NCKAP5-205ENST00000409261 7594 ntAPPRIS P4 TSL 5 BASIC4.27□□□□□ -1.73
CSMD1Q96PZ7 PDE6A-204ENST00000613228 5398 ntTSL 5 BASIC4.27□□□□□ -1.73
CSMD1Q96PZ7 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CSMD1Q96PZ7 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC4.27□□□□□ -1.73
CSMD1Q96PZ7 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
CSMD1Q96PZ7 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC4.27□□□□□ -1.73
CSMD1Q96PZ7 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC4.27□□□□□ -1.73
CSMD1Q96PZ7 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC4.27□□□□□ -1.73
CSMD1Q96PZ7 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
CSMD1Q96PZ7 AC120338.1-201ENST00000625074 1541 ntBASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms