Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC100757.1-201ENST00000616872 1835 ntBASIC6.29□□□□□ -1.4
BRCA1P38398 AC093829.1-201ENST00000506662 1618 ntBASIC6.29□□□□□ -1.4
BRCA1P38398 ABLIM1-214ENST00000533213 7606 ntTSL 5 BASIC6.28□□□□□ -1.4
BRCA1P38398 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
BRCA1P38398 ATP2B4-204ENST00000367218 8918 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
BRCA1P38398 NNT-201ENST00000264663 6483 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
BRCA1P38398 CCT8P1-201ENST00000413611 1657 ntBASIC6.28□□□□□ -1.4
BRCA1P38398 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
BRCA1P38398 RNA5-8SP7-201ENST00000363443 155 ntBASIC6.28□□□□□ -1.4
BRCA1P38398 RNA5SP447-201ENST00000363749 119 ntBASIC6.28□□□□□ -1.4
BRCA1P38398 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC6.28□□□□□ -1.4
BRCA1P38398 RPL23AP1-201ENST00000428990 471 ntBASIC6.28□□□□□ -1.4
BRCA1P38398 KRT8P51-201ENST00000438938 274 ntBASIC6.28□□□□□ -1.4
BRCA1P38398 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC6.28□□□□□ -1.4
BRCA1P38398 AURKAPS2-201ENST00000454983 333 ntBASIC6.28□□□□□ -1.4
BRCA1P38398 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC6.28□□□□□ -1.4
BRCA1P38398 SLC25A51P1-201ENST00000468432 871 ntBASIC6.28□□□□□ -1.4
BRCA1P38398 AC109327.1-201ENST00000471666 403 ntBASIC6.28□□□□□ -1.4
BRCA1P38398 STARD4-AS1-201ENST00000500779 5525 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
BRCA1P38398 SLC25A15P5-201ENST00000508033 253 ntBASIC6.28□□□□□ -1.4
BRCA1P38398 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC6.28□□□□□ -1.4
BRCA1P38398 ENPP7P9-201ENST00000514456 627 ntBASIC6.28□□□□□ -1.4
BRCA1P38398 BNIP3P5-201ENST00000562290 498 ntBASIC6.28□□□□□ -1.4
BRCA1P38398 AC005962.2-201ENST00000611427 652 ntBASIC6.28□□□□□ -1.4
BRCA1P38398 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC6.28□□□□□ -1.4
BRCA1P38398 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
BRCA1P38398 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
BRCA1P38398 KIF13A-205ENST00000378843 5707 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
BRCA1P38398 ZNF652P1-201ENST00000442420 1309 ntBASIC6.28□□□□□ -1.4
BRCA1P38398 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
BRCA1P38398 TTC3P1-201ENST00000399586 6081 ntBASIC6.28□□□□□ -1.4
BRCA1P38398 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC6.28□□□□□ -1.4
BRCA1P38398 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
BRCA1P38398 AC022164.1-201ENST00000568767 2673 ntBASIC6.28□□□□□ -1.4
BRCA1P38398 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
BRCA1P38398 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC6.28□□□□□ -1.4
BRCA1P38398 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
BRCA1P38398 CCDC80-201ENST00000206423 12430 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
BRCA1P38398 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
BRCA1P38398 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC6.28□□□□□ -1.4
BRCA1P38398 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
BRCA1P38398 U3.22-201ENST00000391120 215 ntBASIC6.28□□□□□ -1.4
BRCA1P38398 AL121977.1-201ENST00000401636 979 ntBASIC6.28□□□□□ -1.4
BRCA1P38398 CYCSP11-201ENST00000436426 315 ntBASIC6.28□□□□□ -1.4
BRCA1P38398 NPM1P33-201ENST00000438918 872 ntBASIC6.28□□□□□ -1.4
BRCA1P38398 LINC02210-201ENST00000444561 288 ntBASIC6.28□□□□□ -1.4
BRCA1P38398 RPL17P2-201ENST00000491913 451 ntBASIC6.28□□□□□ -1.4
BRCA1P38398 AC010350.1-201ENST00000504908 231 ntBASIC6.28□□□□□ -1.4
BRCA1P38398 AC097173.1-201ENST00000505862 819 ntBASIC6.28□□□□□ -1.4
BRCA1P38398 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC6.28□□□□□ -1.4
BRCA1P38398 AC133555.2-201ENST00000550213 292 ntBASIC6.28□□□□□ -1.4
BRCA1P38398 AC021483.2-201ENST00000567415 758 ntBASIC6.28□□□□□ -1.4
BRCA1P38398 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC6.28□□□□□ -1.4
BRCA1P38398 AC020910.3-201ENST00000603701 874 ntBASIC6.28□□□□□ -1.4
BRCA1P38398 AL138960.1-201ENST00000613838 513 ntBASIC6.28□□□□□ -1.4
BRCA1P38398 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC6.28□□□□□ -1.4
BRCA1P38398 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC6.28□□□□□ -1.4
BRCA1P38398 SSR1-201ENST00000244763 9669 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
BRCA1P38398 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC6.28□□□□□ -1.4
BRCA1P38398 CD109-201ENST00000287097 9130 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.4
BRCA1P38398 MDM4-205ENST00000391947 10008 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
BRCA1P38398 AC144833.1-201ENST00000567953 4089 ntBASIC6.27□□□□□ -1.41
BRCA1P38398 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC6.27□□□□□ -1.41
BRCA1P38398 ABCA9-201ENST00000340001 6514 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
BRCA1P38398 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
BRCA1P38398 SOX6-201ENST00000316399 8808 ntAPPRIS P3 TSL 5 BASIC6.27□□□□□ -1.41
BRCA1P38398 ADGRL3-214ENST00000511324 5042 ntTSL 5 BASIC6.27□□□□□ -1.41
BRCA1P38398 PRRC2C-201ENST00000338920 10355 ntAPPRIS P2 TSL 5 BASIC6.27□□□□□ -1.41
BRCA1P38398 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC6.27□□□□□ -1.41
BRCA1P38398 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC6.27□□□□□ -1.41
BRCA1P38398 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC6.27□□□□□ -1.41
BRCA1P38398 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
BRCA1P38398 U3.30-201ENST00000391308 210 ntBASIC6.27□□□□□ -1.41
BRCA1P38398 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
BRCA1P38398 AC114755.2-201ENST00000413520 361 ntBASIC6.27□□□□□ -1.41
BRCA1P38398 AL592293.2-201ENST00000422292 996 ntBASIC6.27□□□□□ -1.41
BRCA1P38398 AL389915.1-201ENST00000422463 466 ntBASIC6.27□□□□□ -1.41
BRCA1P38398 TRGV7-201ENST00000427089 353 ntBASIC6.27□□□□□ -1.41
BRCA1P38398 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC6.27□□□□□ -1.41
BRCA1P38398 SLC25A18P1-201ENST00000449385 454 ntBASIC6.27□□□□□ -1.41
BRCA1P38398 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC6.27□□□□□ -1.41
BRCA1P38398 AC091912.1-201ENST00000511351 248 ntBASIC6.27□□□□□ -1.41
BRCA1P38398 RN7SKP276-201ENST00000516242 268 ntBASIC6.27□□□□□ -1.41
BRCA1P38398 AL109766.1-201ENST00000555080 552 ntBASIC6.27□□□□□ -1.41
BRCA1P38398 VN1R85P-201ENST00000601587 426 ntBASIC6.27□□□□□ -1.41
BRCA1P38398 AC009027.1-201ENST00000604510 479 ntBASIC6.27□□□□□ -1.41
BRCA1P38398 NEK3-211ENST00000629912 141 ntTSL 5 BASIC6.27□□□□□ -1.41
BRCA1P38398 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC6.27□□□□□ -1.41
BRCA1P38398 SPA17-204ENST00000532692 4949 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
BRCA1P38398 RIF1-201ENST00000243326 15003 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
BRCA1P38398 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
BRCA1P38398 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
BRCA1P38398 AC004158.1-201ENST00000564508 4319 ntBASIC6.27□□□□□ -1.41
BRCA1P38398 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
BRCA1P38398 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
BRCA1P38398 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
BRCA1P38398 ALB-214ENST00000509063 1911 ntTSL 5 BASIC6.26□□□□□ -1.41
BRCA1P38398 IQCB2P-201ENST00000401788 1633 ntBASIC6.26□□□□□ -1.41
BRCA1P38398 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC6.26□□□□□ -1.41
BRCA1P38398 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC6.26□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms