Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC5.59□□□□□ -1.51
TM9SF3Q9HD45 MIR130A-201ENST00000385274 89 ntBASIC5.59□□□□□ -1.51
TM9SF3Q9HD45 RNU1-77P-201ENST00000390868 162 ntBASIC5.59□□□□□ -1.51
TM9SF3Q9HD45 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.59□□□□□ -1.51
TM9SF3Q9HD45 CYCSP6-201ENST00000434498 302 ntBASIC5.59□□□□□ -1.51
TM9SF3Q9HD45 AC096775.1-201ENST00000437724 448 ntBASIC5.59□□□□□ -1.51
TM9SF3Q9HD45 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC5.59□□□□□ -1.51
TM9SF3Q9HD45 AC073072.2-201ENST00000447425 348 ntBASIC5.59□□□□□ -1.51
TM9SF3Q9HD45 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.59□□□□□ -1.51
TM9SF3Q9HD45 RPS23P2-201ENST00000463671 415 ntBASIC5.59□□□□□ -1.51
TM9SF3Q9HD45 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
TM9SF3Q9HD45 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
TM9SF3Q9HD45 RN7SL826P-201ENST00000479724 288 ntBASIC5.59□□□□□ -1.51
TM9SF3Q9HD45 AC079841.1-201ENST00000481228 950 ntBASIC5.59□□□□□ -1.51
TM9SF3Q9HD45 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
TM9SF3Q9HD45 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.59□□□□□ -1.51
TM9SF3Q9HD45 AP001804.2-201ENST00000533932 910 ntBASIC5.59□□□□□ -1.51
TM9SF3Q9HD45 AC090424.1-201ENST00000535243 736 ntBASIC5.59□□□□□ -1.51
TM9SF3Q9HD45 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC5.59□□□□□ -1.51
TM9SF3Q9HD45 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC5.59□□□□□ -1.51
TM9SF3Q9HD45 AL163952.1-202ENST00000569625 600 ntBASIC5.59□□□□□ -1.51
TM9SF3Q9HD45 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC5.59□□□□□ -1.51
TM9SF3Q9HD45 AC010487.1-201ENST00000594408 1172 ntBASIC5.59□□□□□ -1.51
TM9SF3Q9HD45 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.59□□□□□ -1.51
TM9SF3Q9HD45 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC5.59□□□□□ -1.51
TM9SF3Q9HD45 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
TM9SF3Q9HD45 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
TM9SF3Q9HD45 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.59□□□□□ -1.51
TM9SF3Q9HD45 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
TM9SF3Q9HD45 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC5.59□□□□□ -1.52
TM9SF3Q9HD45 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.59□□□□□ -1.52
TM9SF3Q9HD45 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
TM9SF3Q9HD45 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.59□□□□□ -1.52
TM9SF3Q9HD45 AL137141.1-201ENST00000624622 4836 ntBASIC5.59□□□□□ -1.52
TM9SF3Q9HD45 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
TM9SF3Q9HD45 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC5.59□□□□□ -1.52
TM9SF3Q9HD45 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC5.59□□□□□ -1.52
TM9SF3Q9HD45 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 AC009962.1-201ENST00000567327 3813 ntBASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 SSX3-202ENST00000376893 800 ntTSL 2 BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 AC005042.1-201ENST00000393397 800 ntBASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 AC098592.2-201ENST00000413158 265 ntBASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 SEPT7P8-201ENST00000413308 775 ntBASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 AC006455.6-201ENST00000426192 893 ntBASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 RPL5P25-201ENST00000441148 775 ntBASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 AC107015.1-201ENST00000466902 747 ntBASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 PGAM1P13-201ENST00000507497 754 ntBASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 RN7SKP99-201ENST00000517028 307 ntBASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 AC078899.1-201ENST00000521432 1185 ntBASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 ASB8-215ENST00000540782 659 ntTSL 3 BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 AC012616.1-201ENST00000600294 197 ntBASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 AL159169.2-201ENST00000610061 1269 ntBASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 RPSAP73-201ENST00000614820 330 ntBASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 AL118522.2-201ENST00000616045 615 ntBASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 RLIMP2-201ENST00000427891 1563 ntBASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 SAMMSON-213ENST00000641336 1521 ntBASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 MIPEPP2-201ENST00000422560 1819 ntBASIC5.58□□□□□ -1.52
TM9SF3Q9HD45 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.57□□□□□ -1.52
TM9SF3Q9HD45 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
TM9SF3Q9HD45 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
TM9SF3Q9HD45 AP005435.3-201ENST00000531260 3198 ntBASIC5.57□□□□□ -1.52
TM9SF3Q9HD45 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
TM9SF3Q9HD45 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
TM9SF3Q9HD45 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.57□□□□□ -1.52
TM9SF3Q9HD45 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
TM9SF3Q9HD45 TCP11X1-202ENST00000622971 1372 ntBASIC5.57□□□□□ -1.52
TM9SF3Q9HD45 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
TM9SF3Q9HD45 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.57□□□□□ -1.52
TM9SF3Q9HD45 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 116.9 ms