Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AP003548.1-201ENST00000523862 711 ntTSL 3 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AP003033.2-201ENST00000528901 805 ntBASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AC008083.2-201ENST00000546707 476 ntBASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AC008055.1-201ENST00000547032 609 ntBASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AC013652.2-202ENST00000558948 910 ntTSL 3 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 MTCO1P40-201ENST00000574371 625 ntBASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 MIR5708-201ENST00000579723 85 ntBASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AC090616.1-201ENST00000583895 447 ntBASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AC018638.7-201ENST00000605836 1114 ntBASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AP000255.1-201ENST00000610276 676 ntBASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 MIR6889-201ENST00000613185 59 ntBASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AC012676.3-201ENST00000614983 479 ntBASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AC092140.2-201ENST00000618027 521 ntBASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AC004836.1-201ENST00000623032 634 ntBASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AL353743.3-201ENST00000442109 1468 ntBASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AC120338.1-201ENST00000625074 1541 ntBASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 NSRP1P1-201ENST00000444067 1693 ntBASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AC000367.1-201ENST00000452711 1766 ntBASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 LINC01613-201ENST00000561476 2780 ntBASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 AC007996.1-201ENST00000620414 2821 ntBASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 TLR10-207ENST00000613579 3801 ntAPPRIS P1 TSL 3 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
TRIM39Q9HCM9 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 TNPO1P2-201ENST00000426249 2665 ntBASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 AC138393.1-206ENST00000540997 1886 ntBASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 PRLR-216ENST00000542609 1764 ntTSL 5 BASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 AC100871.1-201ENST00000507871 1456 ntBASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 AC125238.2-201ENST00000430003 1440 ntBASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 RNU6-543P-201ENST00000362576 108 ntBASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 RNA5SP512-201ENST00000364550 120 ntBASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 RNU6-1320P-201ENST00000390838 107 ntBASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 SNORA40.2-201ENST00000390847 128 ntBASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 RNU6-1269P-201ENST00000391139 107 ntBASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 PSMA6P1-201ENST00000400275 741 ntBASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 RN7SKP281-201ENST00000410472 352 ntBASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 AC092745.2-202ENST00000411880 369 ntBASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 OR5AW1P-201ENST00000426334 1006 ntBASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 CNOT7P1-201ENST00000429006 852 ntBASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 MOB1AP1-201ENST00000430903 535 ntBASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 AL359265.1-201ENST00000440296 795 ntBASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 MRPL42P4-201ENST00000453267 443 ntBASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 NECAP1P2-201ENST00000455668 727 ntBASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 AL133477.1-201ENST00000457472 514 ntBASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 RNU6-599P-201ENST00000459383 107 ntBASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 RNU6-1193P-201ENST00000459461 107 ntBASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 AC078785.2-201ENST00000462010 1253 ntTSL 3 BASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 AC092824.1-201ENST00000483524 576 ntBASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 RPL29P23-201ENST00000486188 442 ntBASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 FGB-207ENST00000509493 1164 ntTSL 5 BASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 LINC02057-202ENST00000511794 577 ntTSL 3 BASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 OR5H7P-201ENST00000514084 930 ntBASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 RNU6-1129P-201ENST00000515964 104 ntBASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 IGHV7-34-1-201ENST00000519200 350 ntBASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 C1GALT1P3-201ENST00000522049 819 ntBASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 AC020611.2-201ENST00000535594 671 ntTSL 3 BASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 TPRX1P1-201ENST00000557620 319 ntBASIC6.37□□□□□ -1.39
TRIM39Q9HCM9 AC087465.1-201ENST00000560574 245 ntBASIC6.37□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms