Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.5□□□□□ -1.53
MSH3P20585 MAPK10-338ENST00000641647 3362 ntBASIC5.5□□□□□ -1.53
MSH3P20585 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
MSH3P20585 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.5□□□□□ -1.53
MSH3P20585 RN7SKP28-201ENST00000364770 305 ntBASIC5.5□□□□□ -1.53
MSH3P20585 RN7SKP69-201ENST00000365390 305 ntBASIC5.5□□□□□ -1.53
MSH3P20585 SNORA5.1-201ENST00000384275 131 ntBASIC5.5□□□□□ -1.53
MSH3P20585 RN7SKP293-201ENST00000411389 296 ntBASIC5.5□□□□□ -1.53
MSH3P20585 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC5.5□□□□□ -1.53
MSH3P20585 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
MSH3P20585 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC5.5□□□□□ -1.53
MSH3P20585 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC5.5□□□□□ -1.53
MSH3P20585 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.5□□□□□ -1.53
MSH3P20585 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC5.5□□□□□ -1.53
MSH3P20585 AL161722.1-201ENST00000446972 1032 ntBASIC5.5□□□□□ -1.53
MSH3P20585 IGBP1P3-201ENST00000447449 1000 ntBASIC5.5□□□□□ -1.53
MSH3P20585 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC5.5□□□□□ -1.53
MSH3P20585 AC016724.1-201ENST00000453215 421 ntBASIC5.5□□□□□ -1.53
MSH3P20585 AC013549.1-201ENST00000454086 566 ntTSL 3 BASIC5.5□□□□□ -1.53
MSH3P20585 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
MSH3P20585 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC5.5□□□□□ -1.53
MSH3P20585 IGKV3D-34-201ENST00000522638 302 ntBASIC5.5□□□□□ -1.53
MSH3P20585 OR5AM1P-201ENST00000532136 1032 ntBASIC5.5□□□□□ -1.53
MSH3P20585 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.5□□□□□ -1.53
MSH3P20585 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC5.5□□□□□ -1.53
MSH3P20585 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
MSH3P20585 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC5.5□□□□□ -1.53
MSH3P20585 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC5.5□□□□□ -1.53
MSH3P20585 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC5.5□□□□□ -1.53
MSH3P20585 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC5.5□□□□□ -1.53
MSH3P20585 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.5□□□□□ -1.53
MSH3P20585 AC104695.2-201ENST00000605056 775 ntBASIC5.5□□□□□ -1.53
MSH3P20585 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC5.5□□□□□ -1.53
MSH3P20585 AL139124.1-201ENST00000609123 421 ntBASIC5.5□□□□□ -1.53
MSH3P20585 AP005131.7-201ENST00000610087 611 ntBASIC5.5□□□□□ -1.53
MSH3P20585 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.5□□□□□ -1.53
MSH3P20585 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
MSH3P20585 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
MSH3P20585 AC007938.2-201ENST00000604666 2634 ntBASIC5.5□□□□□ -1.53
MSH3P20585 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
MSH3P20585 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
MSH3P20585 AC010266.2-201ENST00000564741 3255 ntBASIC5.5□□□□□ -1.53
MSH3P20585 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.5□□□□□ -1.53
MSH3P20585 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.5□□□□□ -1.53
MSH3P20585 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
MSH3P20585 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
MSH3P20585 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.49□□□□□ -1.53
MSH3P20585 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
MSH3P20585 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
MSH3P20585 MTCO1P7-201ENST00000419523 1542 ntBASIC5.49□□□□□ -1.53
MSH3P20585 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
MSH3P20585 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.49□□□□□ -1.53
MSH3P20585 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.49□□□□□ -1.53
MSH3P20585 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
MSH3P20585 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
MSH3P20585 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
MSH3P20585 RN7SKP145-201ENST00000363291 303 ntBASIC5.49□□□□□ -1.53
MSH3P20585 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC5.49□□□□□ -1.53
MSH3P20585 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
MSH3P20585 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC5.49□□□□□ -1.53
MSH3P20585 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
MSH3P20585 XIST-201ENST00000416330 750 ntTSL 2 BASIC5.49□□□□□ -1.53
MSH3P20585 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC5.49□□□□□ -1.53
MSH3P20585 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC5.49□□□□□ -1.53
MSH3P20585 RIMKLBP2-201ENST00000424737 654 ntBASIC5.49□□□□□ -1.53
MSH3P20585 OR6D1P-201ENST00000436165 939 ntBASIC5.49□□□□□ -1.53
MSH3P20585 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC5.49□□□□□ -1.53
MSH3P20585 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC5.49□□□□□ -1.53
MSH3P20585 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.49□□□□□ -1.53
MSH3P20585 AP000281.1-201ENST00000444036 316 ntBASIC5.49□□□□□ -1.53
MSH3P20585 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC5.49□□□□□ -1.53
MSH3P20585 AL358876.1-201ENST00000453364 1075 ntBASIC5.49□□□□□ -1.53
MSH3P20585 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC5.49□□□□□ -1.53
MSH3P20585 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC5.49□□□□□ -1.53
MSH3P20585 RPSAP39-201ENST00000467439 883 ntBASIC5.49□□□□□ -1.53
MSH3P20585 RN7SL188P-201ENST00000469842 285 ntBASIC5.49□□□□□ -1.53
MSH3P20585 NPM1P28-201ENST00000492269 840 ntBASIC5.49□□□□□ -1.53
MSH3P20585 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC5.49□□□□□ -1.53
MSH3P20585 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC5.49□□□□□ -1.53
MSH3P20585 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC5.49□□□□□ -1.53
MSH3P20585 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC5.49□□□□□ -1.53
MSH3P20585 MIR1273E-201ENST00000581165 102 ntBASIC5.49□□□□□ -1.53
MSH3P20585 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC5.49□□□□□ -1.53
MSH3P20585 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC5.49□□□□□ -1.53
MSH3P20585 AC012616.1-201ENST00000600294 197 ntBASIC5.49□□□□□ -1.53
MSH3P20585 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC5.49□□□□□ -1.53
MSH3P20585 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC5.49□□□□□ -1.53
MSH3P20585 AC004477.3-201ENST00000614061 590 ntBASIC5.49□□□□□ -1.53
MSH3P20585 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.49□□□□□ -1.53
MSH3P20585 AC132068.1-201ENST00000623805 459 ntBASIC5.49□□□□□ -1.53
MSH3P20585 AC106730.3-201ENST00000624568 641 ntBASIC5.49□□□□□ -1.53
MSH3P20585 HPVC1-201ENST00000629899 1198 ntBASIC5.49□□□□□ -1.53
MSH3P20585 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
MSH3P20585 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
MSH3P20585 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC5.49□□□□□ -1.53
MSH3P20585 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
MSH3P20585 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
MSH3P20585 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
MSH3P20585 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.49□□□□□ -1.53
MSH3P20585 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms