Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 Y_RNA.97-201ENST00000363094 102 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 RNA5SP218-201ENST00000363188 109 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 RNU1-149P-201ENST00000390870 161 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 SNORD115-47-201ENST00000391226 86 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AL390316.1-201ENST00000406279 553 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 Y_RNA.598-201ENST00000410480 95 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AC023141.1-201ENST00000419418 379 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 ELOBP4-201ENST00000423418 296 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AP000431.1-201ENST00000424219 469 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AC007742.1-201ENST00000425789 329 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AL158073.1-201ENST00000426848 1104 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 HNRNPA1P57-201ENST00000431359 530 ntTSL 4 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 RPS21P1-201ENST00000434479 247 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 ELOCP26-201ENST00000436067 329 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 LSM1P1-201ENST00000438629 273 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 DNAJC19P4-201ENST00000440115 345 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AC016396.1-201ENST00000440189 328 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AC106869.1-202ENST00000441997 604 ntTSL 4 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 LINC01525-201ENST00000442182 511 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AL139135.2-201ENST00000445040 433 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AC073909.1-201ENST00000447112 999 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 LINC00533-201ENST00000456103 537 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AC117395.2-201ENST00000463122 1128 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 LINC00881-201ENST00000467995 589 ntTSL 4 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 RPL23P10-201ENST00000468780 412 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 RN7SL91P-201ENST00000469313 291 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 RN7SL647P-201ENST00000485429 300 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AC109462.1-201ENST00000491087 368 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 RPL22-208ENST00000497965 786 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 RPL10P18-201ENST00000519384 309 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 IGLVVI-25-1-201ENST00000521893 249 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AC025524.2-202ENST00000523042 535 ntTSL 4 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AC103974.1-201ENST00000527285 874 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AC087277.1-201ENST00000529910 535 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AP000442.2-201ENST00000531108 440 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 OR52K3P-201ENST00000531655 943 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 PRB1-203ENST00000545626 710 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AL109628.1-201ENST00000556877 366 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AC023908.2-201ENST00000558616 318 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 MIR5697-201ENST00000578045 78 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 SNORD39.3-201ENST00000584451 71 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AC135178.4-201ENST00000585275 548 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 TPGS2-204ENST00000587129 841 ntTSL 4 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 EIF1-207ENST00000591776 797 ntTSL 4 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 IMMP1LP1-201ENST00000605170 488 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 SNORD91A-202ENST00000609620 191 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AL139089.1-201ENST00000620372 975 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 CR392039.4-201ENST00000624968 501 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 5_8S_rRNA.6-201ENST00000637374 152 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 ZNRD1ASP-221ENST00000637794 1074 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 CCNT1-206ENST00000640148 596 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 OR2G6-203ENST00000641804 6084 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 UBAP2-201ENST00000360802 4284 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 GALNTL5-206ENST00000431418 1678 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 KIAA1549L-201ENST00000265654 4492 ntAPPRIS ALT2 TSL 2 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 PSD3-220ENST00000615573 5843 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AC009166.2-201ENST00000624410 2833 ntBASIC5.68□□□□□ -1.5
CCDC140Q96MF4 AC015849.5-201ENST00000604907 5473 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 TAT-201ENST00000355962 3983 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 TTTY4B-201ENST00000420149 1346 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 TTTY4-201ENST00000436568 1346 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 TTTY4C-201ENST00000456123 1346 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 CDC73-204ENST00000635846 3987 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 LINC00861-201ENST00000500989 5330 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 APOL4-212ENST00000616056 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 MT-CO1-201ENST00000361624 1542 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 ACKR2-202ENST00000442925 2879 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 GOLGA6L6-201ENST00000619213 4013 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 HMBOX1-211ENST00000524238 1731 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 CPNE4-202ENST00000502818 2120 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 WDR44-202ENST00000371822 3877 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.68□□□□□ -1.5
CCDC140Q96MF4 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 SLC30A8-208ENST00000521243 1393 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 LINC00261-202ENST00000564492 4912 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 MED21-201ENST00000282892 1753 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 LINC00598-215ENST00000638084 1974 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 CPB2-AS1-202ENST00000606243 2185 ntTSL 2 BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 DDX10P2-201ENST00000417796 2614 ntBASIC5.67□□□□□ -1.5
CCDC140Q96MF4 ADAM3A-207ENST00000490268 2627 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 ATP2B4-204ENST00000367218 8918 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC140Q96MF4 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 95.2 ms