Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 MTURN-202ENST00000324489 5605 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
COL8A1P27658 CDH6-201ENST00000265071 8476 ntAPPRIS P1 TSL 2 BASIC6.68□□□□□ -1.34
COL8A1P27658 GM2A-201ENST00000357164 3896 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL8A1P27658 ZC3H13-201ENST00000242848 8018 ntAPPRIS ALT2 TSL 5 BASIC6.68□□□□□ -1.34
COL8A1P27658 TENM4-201ENST00000278550 14000 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
COL8A1P27658 RBBP5-201ENST00000264515 4404 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL8A1P27658 TMEM52B-203ENST00000381923 2601 ntAPPRIS ALT2 TSL 5 BASIC6.68□□□□□ -1.34
COL8A1P27658 RLIMP2-201ENST00000427891 1563 ntBASIC6.68□□□□□ -1.34
COL8A1P27658 UGT2B25P-201ENST00000511504 1586 ntBASIC6.68□□□□□ -1.34
COL8A1P27658 SMG1P1-202ENST00000309865 4223 ntBASIC6.68□□□□□ -1.34
COL8A1P27658 SLC6A2-206ENST00000567238 3160 ntTSL 2 BASIC6.68□□□□□ -1.34
COL8A1P27658 MFAP3L-203ENST00000393704 5827 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
COL8A1P27658 NCOA4-206ENST00000585056 2124 ntTSL 2 BASIC6.68□□□□□ -1.34
COL8A1P27658 ZNF45-206ENST00000615985 2912 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
COL8A1P27658 LINC02436-202ENST00000509017 2186 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
COL8A1P27658 LAX1-203ENST00000442561 3023 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL8A1P27658 ZNF880-202ENST00000422689 2230 ntAPPRIS P1 TSL 2 BASIC6.68□□□□□ -1.34
COL8A1P27658 SLC13A1-204ENST00000539873 2222 ntTSL 5 BASIC6.68□□□□□ -1.34
COL8A1P27658 CRB1-210ENST00000538660 3397 ntTSL 2 BASIC6.68□□□□□ -1.34
COL8A1P27658 CXCR6-201ENST00000304552 1962 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL8A1P27658 ZNF229-204ENST00000614049 4507 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL8A1P27658 KPNA6-201ENST00000373625 7378 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL8A1P27658 TRIM49D1-203ENST00000605881 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL8A1P27658 WDHD1-202ENST00000420358 3722 ntTSL 5 BASIC6.67□□□□□ -1.34
COL8A1P27658 CEP97-206ENST00000494050 2870 ntAPPRIS ALT2 TSL 2 BASIC6.67□□□□□ -1.34
COL8A1P27658 SAMD3-203ENST00000437477 2028 ntAPPRIS P1 TSL 5 BASIC6.67□□□□□ -1.34
COL8A1P27658 EIF4G3-201ENST00000264211 5802 ntAPPRIS P3 TSL 5 BASIC6.67□□□□□ -1.34
COL8A1P27658 APELA-202ENST00000507152 2602 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL8A1P27658 FHL1-206ENST00000394153 2374 ntTSL 5 BASIC6.67□□□□□ -1.34
COL8A1P27658 NUGGC-201ENST00000413272 3887 ntAPPRIS P1 TSL 5 BASIC6.67□□□□□ -1.34
COL8A1P27658 DTNA-204ENST00000348997 4518 ntAPPRIS P3 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL8A1P27658 ZHX3-211ENST00000544979 3933 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL8A1P27658 XAF1-202ENST00000361842 3623 ntAPPRIS P4 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL8A1P27658 UGT2B4-206ENST00000512583 1836 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL8A1P27658 MFSD8-207ENST00000513559 1813 ntTSL 2 BASIC6.67□□□□□ -1.34
COL8A1P27658 MYB-235ENST00000533624 1818 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL8A1P27658 MYB-238ENST00000534044 1812 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL8A1P27658 TCF7L2-209ENST00000369395 1541 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL8A1P27658 SLC25A30-204ENST00000519676 3670 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL8A1P27658 FBLN5-205ENST00000556154 1875 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL8A1P27658 COL21A1-203ENST00000370819 4094 ntAPPRIS ALT1 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL8A1P27658 NUSAP1-210ENST00000560177 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL8A1P27658 RNU4-81P-201ENST00000363561 144 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 RNA5SP27-201ENST00000363839 119 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 AL139327.1-201ENST00000382988 348 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 RNU6-1106P-201ENST00000390845 107 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 AC092642.1-201ENST00000392417 425 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 MIR1282-201ENST00000408865 101 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 HYKK-202ENST00000408962 847 ntTSL 5 BASIC6.67□□□□□ -1.34
COL8A1P27658 RPS3AP3-201ENST00000411933 242 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC6.67□□□□□ -1.34
COL8A1P27658 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL8A1P27658 AC006065.1-201ENST00000422539 802 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 MTCO2P5-201ENST00000422621 426 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 AC093698.1-201ENST00000423843 571 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 AC127526.2-201ENST00000426436 775 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 GTF2IP20-201ENST00000431663 360 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 MYO5BP3-201ENST00000431872 1279 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 AL389925.1-201ENST00000432257 728 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 Z98752.2-201ENST00000432727 312 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 ANXA2P2-201ENST00000435128 1020 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 RPL7P54-201ENST00000438336 674 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 FREM2-AS1-201ENST00000448887 465 ntTSL 2 BASIC6.67□□□□□ -1.34
COL8A1P27658 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC6.67□□□□□ -1.34
COL8A1P27658 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC6.67□□□□□ -1.34
COL8A1P27658 AL117382.2-201ENST00000455642 403 ntTSL 3 BASIC6.67□□□□□ -1.34
COL8A1P27658 AC234782.3-201ENST00000461229 433 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 AL135752.1-201ENST00000479477 471 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 AC027575.1-201ENST00000481064 460 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 AC073842.2-201ENST00000494221 572 ntTSL 4 BASIC6.67□□□□□ -1.34
COL8A1P27658 AC012170.1-201ENST00000495139 359 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 CHCHD2P7-201ENST00000508008 452 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 AC012560.1-203ENST00000510550 595 ntTSL 4 BASIC6.67□□□□□ -1.34
COL8A1P27658 Vault.2-201ENST00000516519 98 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 RNU6-964P-201ENST00000516524 69 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 AC087808.1-201ENST00000520501 361 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 GRPEL2-AS1-201ENST00000521295 401 ntTSL 3 BASIC6.67□□□□□ -1.34
COL8A1P27658 AC109635.6-201ENST00000525487 1113 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 OR7E96P-201ENST00000530816 976 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 SDHCP4-201ENST00000532834 510 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 LINC01493-202ENST00000533575 581 ntTSL 4 BASIC6.67□□□□□ -1.34
COL8A1P27658 HYKK-203ENST00000563233 734 ntTSL 2 BASIC6.67□□□□□ -1.34
COL8A1P27658 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC6.67□□□□□ -1.34
COL8A1P27658 PRR13P4-201ENST00000577786 421 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC6.67□□□□□ -1.34
COL8A1P27658 H3F3BP2-201ENST00000583907 357 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC6.67□□□□□ -1.34
COL8A1P27658 AC009597.2-201ENST00000604659 592 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 AC087623.4-201ENST00000606593 695 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 AC090948.2-201ENST00000607363 564 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 AC243830.2-201ENST00000618067 630 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 BCAS3-234ENST00000639611 108 ntTSL 5 BASIC6.67□□□□□ -1.34
COL8A1P27658 MTRF1-202ENST00000379477 1948 ntAPPRIS P1 TSL 2 BASIC6.67□□□□□ -1.34
COL8A1P27658 FDFT1-212ENST00000528643 1909 ntTSL 2 BASIC6.67□□□□□ -1.34
COL8A1P27658 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC6.67□□□□□ -1.34
COL8A1P27658 AC023818.2-201ENST00000623817 2304 ntBASIC6.67□□□□□ -1.34
COL8A1P27658 ATP2B4-201ENST00000341360 4658 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL8A1P27658 HNRNPA2B1-201ENST00000354667 3664 ntAPPRIS ALT1 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL8A1P27658 RAD51B-211ENST00000487861 1673 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL8A1P27658 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms