Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 RNU1-88P-201ENST00000459274 128 ntBASIC5.26□□□□□ -1.57
COL6A3P12111 NCOA4P3-201ENST00000513203 1877 ntBASIC5.26□□□□□ -1.57
COL6A3P12111 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC5.26□□□□□ -1.57
COL6A3P12111 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL6A3P12111 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC5.26□□□□□ -1.57
COL6A3P12111 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC5.26□□□□□ -1.57
COL6A3P12111 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC5.26□□□□□ -1.57
COL6A3P12111 AL023881.1-201ENST00000621088 301 ntBASIC5.26□□□□□ -1.57
COL6A3P12111 CDRT1-208ENST00000630868 794 ntBASIC5.26□□□□□ -1.57
COL6A3P12111 PHIP-201ENST00000275034 10460 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL6A3P12111 F5-202ENST00000367797 7024 ntAPPRIS P2 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL6A3P12111 AC005821.1-203ENST00000577270 3145 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL6A3P12111 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC5.26□□□□□ -1.57
COL6A3P12111 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.25□□□□□ -1.57
COL6A3P12111 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
COL6A3P12111 AL008638.3-201ENST00000623027 5182 ntBASIC5.25□□□□□ -1.57
COL6A3P12111 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC5.25□□□□□ -1.57
COL6A3P12111 ENTPD1-205ENST00000453258 5044 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
COL6A3P12111 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL6A3P12111 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL6A3P12111 AF186996.5-201ENST00000418098 904 ntBASIC5.25□□□□□ -1.57
COL6A3P12111 RN7SKP260-201ENST00000516907 149 ntBASIC5.25□□□□□ -1.57
COL6A3P12111 AC012468.1-201ENST00000604888 430 ntBASIC5.25□□□□□ -1.57
COL6A3P12111 FAM71F2-205ENST00000641605 5749 ntBASIC5.25□□□□□ -1.57
COL6A3P12111 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
COL6A3P12111 BCOR-202ENST00000378444 6358 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL6A3P12111 MAPK10-344ENST00000641718 3746 ntBASIC5.25□□□□□ -1.57
COL6A3P12111 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
COL6A3P12111 GOLGB1-201ENST00000340645 11187 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL6A3P12111 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC5.25□□□□□ -1.57
COL6A3P12111 SASH1-204ENST00000622663 5075 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
COL6A3P12111 ZNF229-204ENST00000614049 4507 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL6A3P12111 CNTNAP2-203ENST00000463592 6076 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
COL6A3P12111 NSUN6-201ENST00000377304 2201 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL6A3P12111 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC5.25□□□□□ -1.57
COL6A3P12111 MIR218-2-201ENST00000385006 110 ntBASIC5.25□□□□□ -1.57
COL6A3P12111 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC5.25□□□□□ -1.57
COL6A3P12111 AL731534.1-201ENST00000434711 269 ntBASIC5.25□□□□□ -1.57
COL6A3P12111 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.25□□□□□ -1.57
COL6A3P12111 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC5.25□□□□□ -1.57
COL6A3P12111 RN7SL814P-201ENST00000487715 300 ntBASIC5.25□□□□□ -1.57
COL6A3P12111 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC5.25□□□□□ -1.57
COL6A3P12111 MIR4420-201ENST00000583944 77 ntBASIC5.25□□□□□ -1.57
COL6A3P12111 GMFG-202ENST00000594700 397 ntTSL 2 BASIC5.25□□□□□ -1.57
COL6A3P12111 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5.25□□□□□ -1.57
COL6A3P12111 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC5.25□□□□□ -1.57
COL6A3P12111 GABPB2-201ENST00000368916 1680 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
COL6A3P12111 HSPD1P7-201ENST00000447985 1686 ntBASIC5.25□□□□□ -1.57
COL6A3P12111 POLA1-202ENST00000379068 5486 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
COL6A3P12111 MIAT-218ENST00000613780 10143 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
COL6A3P12111 DOCK1-206ENST00000623213 5761 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
COL6A3P12111 ARNT2-207ENST00000533983 6690 ntAPPRIS ALT1 TSL 5 BASIC5.25□□□□□ -1.57
COL6A3P12111 ZNF107-206ENST00000620827 5685 ntAPPRIS P4 TSL 4 BASIC5.25□□□□□ -1.57
COL6A3P12111 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC5.25□□□□□ -1.57
COL6A3P12111 CLCN3-209ENST00000513761 6692 ntAPPRIS ALT1 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL6A3P12111 TET3-202ENST00000409262 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL6A3P12111 CLTC-201ENST00000269122 7760 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL6A3P12111 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
COL6A3P12111 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC5.24□□□□□ -1.57
COL6A3P12111 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL6A3P12111 OR7E125P-201ENST00000443450 846 ntBASIC5.24□□□□□ -1.57
COL6A3P12111 GMPSP1-201ENST00000514075 579 ntBASIC5.24□□□□□ -1.57
COL6A3P12111 AC027334.1-201ENST00000603257 310 ntBASIC5.24□□□□□ -1.57
COL6A3P12111 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
COL6A3P12111 ZNF462-204ENST00000441147 4691 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL6A3P12111 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL6A3P12111 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL6A3P12111 ANKRD36BP2-207ENST00000622311 5398 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL6A3P12111 PVALB-202ENST00000404171 422 ntTSL 2 BASIC5.24□□□□□ -1.57
COL6A3P12111 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.24□□□□□ -1.57
COL6A3P12111 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC5.24□□□□□ -1.57
COL6A3P12111 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC5.24□□□□□ -1.57
COL6A3P12111 SNORD91A-202ENST00000609620 191 ntBASIC5.24□□□□□ -1.57
COL6A3P12111 TCL6_3.1-201ENST00000619064 137 ntBASIC5.24□□□□□ -1.57
COL6A3P12111 SYNE1-213ENST00000448038 6001 ntTSL 5 BASIC5.24□□□□□ -1.57
COL6A3P12111 ATXN3-204ENST00000429774 6713 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL6A3P12111 TNC-210ENST00000535648 7508 ntTSL 5 BASIC5.24□□□□□ -1.57
COL6A3P12111 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL6A3P12111 CR1-203ENST00000367051 7469 ntTSL 5 BASIC5.24□□□□□ -1.57
COL6A3P12111 CR1-204ENST00000367052 7469 ntTSL 5 BASIC5.24□□□□□ -1.57
COL6A3P12111 CR1-205ENST00000367053 7469 ntTSL 5 BASIC5.24□□□□□ -1.57
COL6A3P12111 PCDH15-229ENST00000616114 5846 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL6A3P12111 GTF2IP5-201ENST00000414608 731 ntBASIC5.23□□□□□ -1.57
COL6A3P12111 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC5.23□□□□□ -1.57
COL6A3P12111 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
COL6A3P12111 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC5.23□□□□□ -1.57
COL6A3P12111 AC109464.1-201ENST00000511091 819 ntBASIC5.23□□□□□ -1.57
COL6A3P12111 AC073581.1-201ENST00000519036 575 ntBASIC5.23□□□□□ -1.57
COL6A3P12111 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
COL6A3P12111 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC5.23□□□□□ -1.57
COL6A3P12111 AC116312.1-201ENST00000606841 314 ntBASIC5.23□□□□□ -1.57
COL6A3P12111 AL445647.2-201ENST00000615170 130 ntBASIC5.23□□□□□ -1.57
COL6A3P12111 AC114876.1-201ENST00000490962 1366 ntBASIC5.23□□□□□ -1.57
COL6A3P12111 VWA5A-205ENST00000456829 4388 ntAPPRIS P4 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL6A3P12111 FAM129A-201ENST00000367511 6928 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL6A3P12111 CA5A-201ENST00000309893 7567 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL6A3P12111 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC5.23□□□□□ -1.57
COL6A3P12111 TENM2-205ENST00000519204 9427 ntTSL 5 BASIC5.23□□□□□ -1.57
COL6A3P12111 MUC22-201ENST00000561890 6019 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
COL6A3P12111 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 178.1 ms