Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.7□□□□□ -1.5
APOEP02649 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
APOEP02649 SAMMSON-209ENST00000641222 1100 ntBASIC5.7□□□□□ -1.5
APOEP02649 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
APOEP02649 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
APOEP02649 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
APOEP02649 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.7□□□□□ -1.5
APOEP02649 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
APOEP02649 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
APOEP02649 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC5.7□□□□□ -1.5
APOEP02649 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
APOEP02649 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
APOEP02649 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
APOEP02649 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.69□□□□□ -1.5
APOEP02649 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.69□□□□□ -1.5
APOEP02649 AC003985.2-201ENST00000562268 1669 ntBASIC5.69□□□□□ -1.5
APOEP02649 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
APOEP02649 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
APOEP02649 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
APOEP02649 SNORA51.1-201ENST00000363243 140 ntBASIC5.69□□□□□ -1.5
APOEP02649 SNORD56.6-201ENST00000384569 71 ntBASIC5.69□□□□□ -1.5
APOEP02649 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
APOEP02649 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC5.69□□□□□ -1.5
APOEP02649 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.69□□□□□ -1.5
APOEP02649 AC018638.3-201ENST00000461273 132 ntBASIC5.69□□□□□ -1.5
APOEP02649 ABCC13-202ENST00000463099 3842 ntBASIC5.69□□□□□ -1.5
APOEP02649 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.69□□□□□ -1.5
APOEP02649 AC011411.1-201ENST00000509592 876 ntBASIC5.69□□□□□ -1.5
APOEP02649 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC5.69□□□□□ -1.5
APOEP02649 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC5.69□□□□□ -1.5
APOEP02649 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.69□□□□□ -1.5
APOEP02649 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC5.69□□□□□ -1.5
APOEP02649 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.69□□□□□ -1.5
APOEP02649 AC090286.3-201ENST00000573133 187 ntBASIC5.69□□□□□ -1.5
APOEP02649 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.69□□□□□ -1.5
APOEP02649 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC5.69□□□□□ -1.5
APOEP02649 AC005840.5-201ENST00000619166 599 ntBASIC5.69□□□□□ -1.5
APOEP02649 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
APOEP02649 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
APOEP02649 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
APOEP02649 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.69□□□□□ -1.5
APOEP02649 AP001029.2-203ENST00000589795 4910 ntBASIC5.69□□□□□ -1.5
APOEP02649 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.68□□□□□ -1.5
APOEP02649 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
APOEP02649 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC5.68□□□□□ -1.5
APOEP02649 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.68□□□□□ -1.5
APOEP02649 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.68□□□□□ -1.5
APOEP02649 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
APOEP02649 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
APOEP02649 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.68□□□□□ -1.5
APOEP02649 AC009804.1-201ENST00000400949 179 ntBASIC5.68□□□□□ -1.5
APOEP02649 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.68□□□□□ -1.5
APOEP02649 GPS2P1-201ENST00000411761 986 ntBASIC5.68□□□□□ -1.5
APOEP02649 RPL12P17-201ENST00000432393 498 ntBASIC5.68□□□□□ -1.5
APOEP02649 NDUFB4P8-201ENST00000435351 367 ntBASIC5.68□□□□□ -1.5
APOEP02649 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC5.68□□□□□ -1.5
APOEP02649 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC5.68□□□□□ -1.5
APOEP02649 AL672138.1-201ENST00000450604 1015 ntBASIC5.68□□□□□ -1.5
APOEP02649 AZGP1P2-201ENST00000454506 345 ntBASIC5.68□□□□□ -1.5
APOEP02649 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.68□□□□□ -1.5
APOEP02649 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC5.68□□□□□ -1.5
APOEP02649 RN7SL447P-201ENST00000494711 245 ntBASIC5.68□□□□□ -1.5
APOEP02649 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.68□□□□□ -1.5
APOEP02649 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC5.68□□□□□ -1.5
APOEP02649 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
APOEP02649 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC5.68□□□□□ -1.5
APOEP02649 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.68□□□□□ -1.5
APOEP02649 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
APOEP02649 SMARCE1P3-201ENST00000553649 1231 ntBASIC5.68□□□□□ -1.5
APOEP02649 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
APOEP02649 AC006272.2-201ENST00000594725 163 ntBASIC5.68□□□□□ -1.5
APOEP02649 AC000068.2-201ENST00000608816 460 ntBASIC5.68□□□□□ -1.5
APOEP02649 AC010632.3-201ENST00000611377 369 ntBASIC5.68□□□□□ -1.5
APOEP02649 AC007204.2-201ENST00000615022 616 ntBASIC5.68□□□□□ -1.5
APOEP02649 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC5.68□□□□□ -1.5
APOEP02649 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
APOEP02649 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.68□□□□□ -1.5
APOEP02649 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC5.68□□□□□ -1.5
APOEP02649 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
APOEP02649 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
APOEP02649 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.68□□□□□ -1.5
APOEP02649 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC5.68□□□□□ -1.5
APOEP02649 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
APOEP02649 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
APOEP02649 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
APOEP02649 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC5.68□□□□□ -1.5
APOEP02649 AC079097.1-201ENST00000512187 1399 ntBASIC5.67□□□□□ -1.5
APOEP02649 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
APOEP02649 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
APOEP02649 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.67□□□□□ -1.5
APOEP02649 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
APOEP02649 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
APOEP02649 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
APOEP02649 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
APOEP02649 GABARAPL3-201ENST00000412799 354 ntBASIC5.67□□□□□ -1.5
APOEP02649 NPM1P4-201ENST00000414095 812 ntBASIC5.67□□□□□ -1.5
APOEP02649 LINC01291-202ENST00000418204 441 ntTSL 5 BASIC5.67□□□□□ -1.5
APOEP02649 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC5.67□□□□□ -1.5
APOEP02649 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC5.67□□□□□ -1.5
APOEP02649 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms