Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 AK3P4-201ENST00000504283 583 ntBASIC9.17□□□□□ -0.94
CUX2O14529 MAL2-201ENST00000522112 573 ntTSL 4 BASIC9.17□□□□□ -0.94
CUX2O14529 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC9.17□□□□□ -0.94
CUX2O14529 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC9.17□□□□□ -0.94
CUX2O14529 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC9.17□□□□□ -0.94
CUX2O14529 AC007224.1-201ENST00000564410 144 ntBASIC9.17□□□□□ -0.94
CUX2O14529 MIR4444-1-201ENST00000581696 74 ntBASIC9.17□□□□□ -0.94
CUX2O14529 MIR4444-2-201ENST00000584390 74 ntBASIC9.17□□□□□ -0.94
CUX2O14529 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC9.17□□□□□ -0.94
CUX2O14529 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC9.17□□□□□ -0.94
CUX2O14529 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC9.17□□□□□ -0.94
CUX2O14529 MEF2C-210ENST00000506554 3469 ntTSL 5 BASIC9.17□□□□□ -0.94
CUX2O14529 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
CUX2O14529 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
CUX2O14529 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC9.16□□□□□ -0.94
CUX2O14529 BRCA1-221ENST00000493795 5732 ntTSL 5 BASIC9.16□□□□□ -0.94
CUX2O14529 ZHX3-201ENST00000309060 10030 ntAPPRIS P1 TSL 5 BASIC9.16□□□□□ -0.94
CUX2O14529 RNU4-39P-201ENST00000362455 127 ntBASIC9.16□□□□□ -0.94
CUX2O14529 U3.22-201ENST00000391120 215 ntBASIC9.16□□□□□ -0.94
CUX2O14529 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC9.16□□□□□ -0.94
CUX2O14529 NPM1P33-201ENST00000438918 872 ntBASIC9.16□□□□□ -0.94
CUX2O14529 AC112498.1-201ENST00000444401 332 ntBASIC9.16□□□□□ -0.94
CUX2O14529 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC9.16□□□□□ -0.94
CUX2O14529 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC9.16□□□□□ -0.94
CUX2O14529 AL445687.2-201ENST00000458156 728 ntBASIC9.16□□□□□ -0.94
CUX2O14529 RNA5SP464-201ENST00000516251 108 ntBASIC9.16□□□□□ -0.94
CUX2O14529 RN7SKP92-201ENST00000517266 244 ntBASIC9.16□□□□□ -0.94
CUX2O14529 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC9.16□□□□□ -0.94
CUX2O14529 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC9.16□□□□□ -0.94
CUX2O14529 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC9.16□□□□□ -0.94
CUX2O14529 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC9.16□□□□□ -0.94
CUX2O14529 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC9.16□□□□□ -0.94
CUX2O14529 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC9.16□□□□□ -0.94
CUX2O14529 AL356218.2-201ENST00000605264 187 ntBASIC9.16□□□□□ -0.94
CUX2O14529 UBA3-213ENST00000631029 123 ntTSL 5 BASIC9.16□□□□□ -0.94
CUX2O14529 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC9.16□□□□□ -0.94
CUX2O14529 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC9.16□□□□□ -0.94
CUX2O14529 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
CUX2O14529 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
CUX2O14529 MMS22L-201ENST00000275053 8643 ntAPPRIS P1 TSL 2 BASIC9.16□□□□□ -0.94
CUX2O14529 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC9.16□□□□□ -0.94
CUX2O14529 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC9.16□□□□□ -0.94
CUX2O14529 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
CUX2O14529 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
CUX2O14529 RPL36AP36-201ENST00000418616 301 ntBASIC9.15□□□□□ -0.94
CUX2O14529 EI24P4-201ENST00000423683 1078 ntBASIC9.15□□□□□ -0.94
CUX2O14529 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
CUX2O14529 OSTCP1-201ENST00000455507 450 ntBASIC9.15□□□□□ -0.94
CUX2O14529 CSNK1A1P3-201ENST00000504105 330 ntBASIC9.15□□□□□ -0.94
CUX2O14529 AL121873.1-201ENST00000616013 524 ntBASIC9.15□□□□□ -0.94
CUX2O14529 PDE6A-205ENST00000617647 4039 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
CUX2O14529 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC9.15□□□□□ -0.94
CUX2O14529 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC9.15□□□□□ -0.94
CUX2O14529 ADAMTS6-203ENST00000381055 7311 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
CUX2O14529 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
CUX2O14529 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC9.15□□□□□ -0.94
CUX2O14529 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
CUX2O14529 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
CUX2O14529 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
CUX2O14529 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC9.15□□□□□ -0.94
CUX2O14529 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.95
CUX2O14529 ITPR1-204ENST00000443694 9513 ntAPPRIS ALT1 TSL 1 (best) BASIC9.15□□□□□ -0.95
CUX2O14529 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.95
CUX2O14529 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC9.15□□□□□ -0.95
CUX2O14529 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC9.15□□□□□ -0.95
CUX2O14529 NUDT19P3-201ENST00000404698 555 ntBASIC9.15□□□□□ -0.95
CUX2O14529 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC9.15□□□□□ -0.95
CUX2O14529 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC9.15□□□□□ -0.95
CUX2O14529 RPS27AP12-201ENST00000429552 465 ntBASIC9.15□□□□□ -0.95
CUX2O14529 AL353748.1-201ENST00000440753 474 ntBASIC9.15□□□□□ -0.95
CUX2O14529 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC9.15□□□□□ -0.95
CUX2O14529 AC091167.1-201ENST00000492017 396 ntBASIC9.15□□□□□ -0.95
CUX2O14529 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC9.15□□□□□ -0.95
CUX2O14529 SAP18P1-201ENST00000512058 390 ntBASIC9.15□□□□□ -0.95
CUX2O14529 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC9.15□□□□□ -0.95
CUX2O14529 RNA5SP143-201ENST00000516936 115 ntBASIC9.15□□□□□ -0.95
CUX2O14529 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC9.15□□□□□ -0.95
CUX2O14529 IPO5-229ENST00000631030 192 ntTSL 5 BASIC9.15□□□□□ -0.95
CUX2O14529 ERBB4-205ENST00000436443 12084 ntAPPRIS ALT2 TSL 1 (best) BASIC9.14□□□□□ -0.95
CUX2O14529 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC9.14□□□□□ -0.95
CUX2O14529 SCIN-201ENST00000297029 9713 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
CUX2O14529 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
CUX2O14529 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
CUX2O14529 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
CUX2O14529 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC9.14□□□□□ -0.95
CUX2O14529 AIMP1-203ENST00000442366 2519 ntAPPRIS P3 TSL 5 BASIC9.14□□□□□ -0.95
CUX2O14529 ZBTB34-202ENST00000373452 6528 ntAPPRIS P1 BASIC9.14□□□□□ -0.95
CUX2O14529 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
CUX2O14529 TRPS1-203ENST00000395715 9990 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
CUX2O14529 NSF-206ENST00000575068 2667 ntTSL 2 BASIC9.14□□□□□ -0.95
CUX2O14529 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC9.14□□□□□ -0.95
CUX2O14529 RNA5SP428-201ENST00000365129 132 ntBASIC9.14□□□□□ -0.95
CUX2O14529 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC9.14□□□□□ -0.95
CUX2O14529 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC9.14□□□□□ -0.95
CUX2O14529 AP000797.2-201ENST00000475768 606 ntBASIC9.14□□□□□ -0.95
CUX2O14529 RPS7P6-201ENST00000485777 579 ntBASIC9.14□□□□□ -0.95
CUX2O14529 COX6B1P5-201ENST00000509843 249 ntBASIC9.14□□□□□ -0.95
CUX2O14529 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC9.14□□□□□ -0.95
CUX2O14529 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC9.14□□□□□ -0.95
CUX2O14529 DHFRP1-201ENST00000579682 559 ntBASIC9.14□□□□□ -0.95
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms