Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
CUX2O14529 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
CUX2O14529 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC9.21□□□□□ -0.94
CUX2O14529 OR5A2-201ENST00000302040 6318 ntAPPRIS P1 BASIC9.21□□□□□ -0.94
CUX2O14529 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC9.21□□□□□ -0.94
CUX2O14529 AC017104.4-201ENST00000636283 1592 ntBASIC9.21□□□□□ -0.94
CUX2O14529 MIR208A-201ENST00000362287 71 ntBASIC9.21□□□□□ -0.94
CUX2O14529 RNU1-146P-201ENST00000364015 165 ntBASIC9.21□□□□□ -0.94
CUX2O14529 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
CUX2O14529 AC007559.1-201ENST00000428736 355 ntBASIC9.21□□□□□ -0.94
CUX2O14529 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC9.21□□□□□ -0.94
CUX2O14529 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC9.21□□□□□ -0.94
CUX2O14529 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC9.21□□□□□ -0.94
CUX2O14529 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC9.21□□□□□ -0.94
CUX2O14529 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC9.21□□□□□ -0.94
CUX2O14529 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC9.21□□□□□ -0.94
CUX2O14529 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
CUX2O14529 HSPD1P8-201ENST00000400121 1658 ntBASIC9.21□□□□□ -0.94
CUX2O14529 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
CUX2O14529 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
CUX2O14529 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
CUX2O14529 AMOT-201ENST00000304758 6888 ntAPPRIS P3 TSL 1 (best) BASIC9.2□□□□□ -0.94
CUX2O14529 PDE4DIP-206ENST00000369356 8307 ntAPPRIS P4 TSL 1 (best) BASIC9.2□□□□□ -0.94
CUX2O14529 ANKRD46-201ENST00000335659 2649 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
CUX2O14529 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
CUX2O14529 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC9.2□□□□□ -0.94
CUX2O14529 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
CUX2O14529 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC9.2□□□□□ -0.94
CUX2O14529 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC9.2□□□□□ -0.94
CUX2O14529 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC9.2□□□□□ -0.94
CUX2O14529 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC9.2□□□□□ -0.94
CUX2O14529 GTF2F2P1-201ENST00000511083 675 ntBASIC9.2□□□□□ -0.94
CUX2O14529 SCARNA16.4-201ENST00000516956 187 ntBASIC9.2□□□□□ -0.94
CUX2O14529 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC9.2□□□□□ -0.94
CUX2O14529 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC9.2□□□□□ -0.94
CUX2O14529 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC9.2□□□□□ -0.94
CUX2O14529 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC9.2□□□□□ -0.94
CUX2O14529 AGGF1P7-201ENST00000562369 913 ntBASIC9.2□□□□□ -0.94
CUX2O14529 KPNA2P3-201ENST00000584190 848 ntBASIC9.2□□□□□ -0.94
CUX2O14529 MEMO1P5-201ENST00000604810 406 ntBASIC9.2□□□□□ -0.94
CUX2O14529 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC9.2□□□□□ -0.94
CUX2O14529 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
CUX2O14529 COBLL1-203ENST00000392717 9523 ntAPPRIS ALT2 TSL 5 BASIC9.2□□□□□ -0.94
CUX2O14529 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
CUX2O14529 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC9.2□□□□□ -0.94
CUX2O14529 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
CUX2O14529 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC9.19□□□□□ -0.94
CUX2O14529 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC9.19□□□□□ -0.94
CUX2O14529 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC9.19□□□□□ -0.94
CUX2O14529 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC9.19□□□□□ -0.94
CUX2O14529 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
CUX2O14529 AC078842.2-201ENST00000447529 1835 ntTSL 2 BASIC9.19□□□□□ -0.94
CUX2O14529 AL117378.2-201ENST00000622916 1337 ntBASIC9.19□□□□□ -0.94
CUX2O14529 PAPPA-AS1-201ENST00000445861 2450 ntBASIC9.19□□□□□ -0.94
CUX2O14529 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
CUX2O14529 SLC4A10-201ENST00000272716 3414 ntTSL 5 BASIC9.19□□□□□ -0.94
CUX2O14529 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
CUX2O14529 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
CUX2O14529 RNA5SP28-201ENST00000363841 119 ntBASIC9.19□□□□□ -0.94
CUX2O14529 AP002530.1-201ENST00000405705 684 ntBASIC9.19□□□□□ -0.94
CUX2O14529 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC9.19□□□□□ -0.94
CUX2O14529 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC9.19□□□□□ -0.94
CUX2O14529 TRBV5-2-201ENST00000489095 273 ntBASIC9.19□□□□□ -0.94
CUX2O14529 TOMM22P4-201ENST00000511318 336 ntBASIC9.19□□□□□ -0.94
CUX2O14529 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC9.19□□□□□ -0.94
CUX2O14529 GCSHP4-201ENST00000538792 439 ntBASIC9.19□□□□□ -0.94
CUX2O14529 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
CUX2O14529 AL512782.1-201ENST00000603093 364 ntBASIC9.19□□□□□ -0.94
CUX2O14529 AP003789.1-201ENST00000617737 605 ntBASIC9.19□□□□□ -0.94
CUX2O14529 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC9.19□□□□□ -0.94
CUX2O14529 AC005858.4-201ENST00000623191 700 ntBASIC9.19□□□□□ -0.94
CUX2O14529 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC9.19□□□□□ -0.94
CUX2O14529 DHX40P1-201ENST00000588725 1412 ntBASIC9.19□□□□□ -0.94
CUX2O14529 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC9.19□□□□□ -0.94
CUX2O14529 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
CUX2O14529 LHX9-201ENST00000367387 7836 ntAPPRIS P3 TSL 1 (best) BASIC9.18□□□□□ -0.94
CUX2O14529 NSUN6-201ENST00000377304 2201 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
CUX2O14529 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC9.18□□□□□ -0.94
CUX2O14529 AP001273.1-201ENST00000624493 3152 ntBASIC9.18□□□□□ -0.94
CUX2O14529 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC9.18□□□□□ -0.94
CUX2O14529 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
CUX2O14529 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC9.18□□□□□ -0.94
CUX2O14529 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC9.18□□□□□ -0.94
CUX2O14529 NPM1P42-201ENST00000560329 862 ntBASIC9.18□□□□□ -0.94
CUX2O14529 RN7SL371P-201ENST00000578099 267 ntBASIC9.18□□□□□ -0.94
CUX2O14529 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC9.18□□□□□ -0.94
CUX2O14529 AC020915.5-201ENST00000596836 964 ntBASIC9.18□□□□□ -0.94
CUX2O14529 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC9.18□□□□□ -0.94
CUX2O14529 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC9.18□□□□□ -0.94
CUX2O14529 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC9.18□□□□□ -0.94
CUX2O14529 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC9.18□□□□□ -0.94
CUX2O14529 CPS1-203ENST00000430249 5698 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
CUX2O14529 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC9.18□□□□□ -0.94
CUX2O14529 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC9.18□□□□□ -0.94
CUX2O14529 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC9.17□□□□□ -0.94
CUX2O14529 RNU6-525P-201ENST00000363685 104 ntBASIC9.17□□□□□ -0.94
CUX2O14529 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC9.17□□□□□ -0.94
CUX2O14529 KNOP1P3-201ENST00000446933 426 ntBASIC9.17□□□□□ -0.94
CUX2O14529 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC9.17□□□□□ -0.94
CUX2O14529 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC9.17□□□□□ -0.94
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms