Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
VPS39Q96JC1 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
VPS39Q96JC1 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
VPS39Q96JC1 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
VPS39Q96JC1 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.56□□□□□ -1.52
VPS39Q96JC1 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC5.56□□□□□ -1.52
VPS39Q96JC1 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC5.56□□□□□ -1.52
VPS39Q96JC1 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC5.56□□□□□ -1.52
VPS39Q96JC1 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
VPS39Q96JC1 AP001029.2-203ENST00000589795 4910 ntBASIC5.56□□□□□ -1.52
VPS39Q96JC1 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
VPS39Q96JC1 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
VPS39Q96JC1 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
VPS39Q96JC1 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC5.56□□□□□ -1.52
VPS39Q96JC1 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
VPS39Q96JC1 CXADRP1-201ENST00000398098 1095 ntBASIC5.56□□□□□ -1.52
VPS39Q96JC1 OR7E101P-201ENST00000400428 513 ntBASIC5.56□□□□□ -1.52
VPS39Q96JC1 AL009179.1-201ENST00000406085 265 ntBASIC5.56□□□□□ -1.52
VPS39Q96JC1 LSM5-203ENST00000409782 649 ntTSL 5 BASIC5.56□□□□□ -1.52
VPS39Q96JC1 GPS2P1-201ENST00000411761 986 ntBASIC5.56□□□□□ -1.52
VPS39Q96JC1 RPSAP35-201ENST00000413753 818 ntBASIC5.56□□□□□ -1.52
VPS39Q96JC1 LINC00701-201ENST00000418295 742 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
VPS39Q96JC1 VTI1BP4-201ENST00000427516 527 ntBASIC5.56□□□□□ -1.52
VPS39Q96JC1 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.56□□□□□ -1.52
VPS39Q96JC1 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC5.56□□□□□ -1.52
VPS39Q96JC1 AC006335.2-201ENST00000437993 330 ntBASIC5.56□□□□□ -1.52
VPS39Q96JC1 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC5.56□□□□□ -1.52
VPS39Q96JC1 RN7SL72P-201ENST00000460697 269 ntBASIC5.56□□□□□ -1.52
VPS39Q96JC1 AC087672.1-201ENST00000479876 766 ntBASIC5.56□□□□□ -1.52
VPS39Q96JC1 AL133372.1-201ENST00000493565 745 ntBASIC5.56□□□□□ -1.52
VPS39Q96JC1 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC5.56□□□□□ -1.52
VPS39Q96JC1 AC021106.1-201ENST00000509020 1058 ntBASIC5.56□□□□□ -1.52
VPS39Q96JC1 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC5.56□□□□□ -1.52
VPS39Q96JC1 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC5.56□□□□□ -1.52
VPS39Q96JC1 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC5.56□□□□□ -1.52
VPS39Q96JC1 AC079064.1-201ENST00000528365 362 ntBASIC5.56□□□□□ -1.52
VPS39Q96JC1 TRIM51DP-201ENST00000529746 596 ntBASIC5.56□□□□□ -1.52
VPS39Q96JC1 NOX4-213ENST00000531342 696 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
VPS39Q96JC1 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.56□□□□□ -1.52
VPS39Q96JC1 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC5.56□□□□□ -1.52
VPS39Q96JC1 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.56□□□□□ -1.52
VPS39Q96JC1 AC115989.2-201ENST00000578640 563 ntBASIC5.56□□□□□ -1.52
VPS39Q96JC1 MIR7853-201ENST00000584820 132 ntBASIC5.56□□□□□ -1.52
VPS39Q96JC1 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
VPS39Q96JC1 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
VPS39Q96JC1 AC009237.13-201ENST00000603193 276 ntBASIC5.56□□□□□ -1.52
VPS39Q96JC1 AP005212.4-201ENST00000614206 710 ntBASIC5.56□□□□□ -1.52
VPS39Q96JC1 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.56□□□□□ -1.52
VPS39Q96JC1 CXADRP3-202ENST00000617265 1100 ntBASIC5.56□□□□□ -1.52
VPS39Q96JC1 AL121890.2-201ENST00000617644 465 ntBASIC5.56□□□□□ -1.52
VPS39Q96JC1 AL390318.1-201ENST00000624564 687 ntBASIC5.56□□□□□ -1.52
VPS39Q96JC1 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC5.56□□□□□ -1.52
VPS39Q96JC1 OR8A1-204ENST00000642111 1145 ntBASIC5.56□□□□□ -1.52
VPS39Q96JC1 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.56□□□□□ -1.52
VPS39Q96JC1 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC5.56□□□□□ -1.52
VPS39Q96JC1 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC5.56□□□□□ -1.52
VPS39Q96JC1 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
VPS39Q96JC1 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
VPS39Q96JC1 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
VPS39Q96JC1 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
VPS39Q96JC1 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC5.56□□□□□ -1.52
VPS39Q96JC1 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.55□□□□□ -1.52
VPS39Q96JC1 Z95331.1-201ENST00000623075 23112 ntBASIC5.55□□□□□ -1.52
VPS39Q96JC1 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
VPS39Q96JC1 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
VPS39Q96JC1 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
VPS39Q96JC1 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.55□□□□□ -1.52
VPS39Q96JC1 EEF1A1P21-201ENST00000512363 1344 ntBASIC5.55□□□□□ -1.52
VPS39Q96JC1 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.55□□□□□ -1.52
VPS39Q96JC1 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
VPS39Q96JC1 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
VPS39Q96JC1 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
VPS39Q96JC1 AC112198.2-201ENST00000426589 6996 ntBASIC5.55□□□□□ -1.52
VPS39Q96JC1 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.55□□□□□ -1.52
VPS39Q96JC1 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
VPS39Q96JC1 RN7SKP275-201ENST00000364626 301 ntBASIC5.55□□□□□ -1.52
VPS39Q96JC1 BX119904.3-201ENST00000428194 957 ntBASIC5.55□□□□□ -1.52
VPS39Q96JC1 FGF12-202ENST00000430714 603 ntTSL 2 BASIC5.55□□□□□ -1.52
VPS39Q96JC1 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC5.55□□□□□ -1.52
VPS39Q96JC1 HMGB3P24-201ENST00000433260 622 ntBASIC5.55□□□□□ -1.52
VPS39Q96JC1 AL359839.1-201ENST00000451975 1160 ntBASIC5.55□□□□□ -1.52
VPS39Q96JC1 RPS23P6-201ENST00000466136 431 ntBASIC5.55□□□□□ -1.52
VPS39Q96JC1 SNORA70.20-201ENST00000516848 126 ntBASIC5.55□□□□□ -1.52
VPS39Q96JC1 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
VPS39Q96JC1 DPPA2P4-201ENST00000563717 878 ntBASIC5.55□□□□□ -1.52
VPS39Q96JC1 AC093591.2-201ENST00000565254 3843 ntBASIC5.55□□□□□ -1.52
VPS39Q96JC1 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC5.55□□□□□ -1.52
VPS39Q96JC1 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC5.55□□□□□ -1.52
VPS39Q96JC1 MIR6071-201ENST00000616741 78 ntBASIC5.55□□□□□ -1.52
VPS39Q96JC1 uc_338.7-201ENST00000621834 124 ntBASIC5.55□□□□□ -1.52
VPS39Q96JC1 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
VPS39Q96JC1 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC5.55□□□□□ -1.52
VPS39Q96JC1 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.55□□□□□ -1.52
VPS39Q96JC1 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
VPS39Q96JC1 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
VPS39Q96JC1 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.55□□□□□ -1.52
VPS39Q96JC1 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.55□□□□□ -1.52
VPS39Q96JC1 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
VPS39Q96JC1 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
VPS39Q96JC1 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC5.55□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 135.5 ms