Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
ZNF549Q6P9A3 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
ZNF549Q6P9A3 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
ZNF549Q6P9A3 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
ZNF549Q6P9A3 NLRP3P1-201ENST00000622303 1785 ntBASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 RNU6-564P-201ENST00000410983 104 ntBASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 AL022331.1-201ENST00000429025 477 ntBASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 LDHAP2-201ENST00000437325 985 ntBASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 AC108751.3-201ENST00000461814 1020 ntBASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 AC011476.1-201ENST00000466725 307 ntBASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 UBFD1P1-201ENST00000473259 814 ntBASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 AC027338.1-201ENST00000514840 825 ntBASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 SNORA70.17-201ENST00000516449 133 ntBASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 RNA5SP271-201ENST00000516700 88 ntBASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 SNORA70.20-201ENST00000516848 126 ntBASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 HMGB1P42-201ENST00000532126 553 ntBASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 MIR4311-201ENST00000580794 100 ntBASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 AC018761.4-201ENST00000585742 272 ntTSL 3 BASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 AC006116.7-201ENST00000590141 756 ntBASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 AC020915.5-201ENST00000596836 964 ntBASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 AC009237.13-201ENST00000603193 276 ntBASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 AC120053.1-201ENST00000607706 736 ntBASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 AL138955.1-201ENST00000622881 1040 ntBASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 AL109659.3-201ENST00000624985 950 ntBASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 AL449283.1-201ENST00000602631 3403 ntBASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 MTCO1P15-201ENST00000529569 1526 ntBASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.57□□□□□ -1.52
ZNF549Q6P9A3 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 OR52B3P-201ENST00000314715 928 ntBASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 RNA5SP394-201ENST00000364216 119 ntBASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 PPCS-201ENST00000372556 984 ntTSL 2 BASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 HMGB1P20-201ENST00000402555 677 ntBASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 SSR1P2-201ENST00000415208 787 ntBASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 AC007064.3-201ENST00000422608 359 ntBASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 TRGV7-201ENST00000427089 353 ntBASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 USP12PY-201ENST00000427677 1064 ntBASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 AC011242.1-201ENST00000433596 1158 ntBASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 AC006335.2-201ENST00000437993 330 ntBASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 AL117351.1-201ENST00000438864 766 ntBASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 PCNPP2-201ENST00000441651 455 ntBASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 LINC02210-201ENST00000444561 288 ntBASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 HMGN1P2-201ENST00000445197 310 ntBASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 MTND5P8-201ENST00000449817 1083 ntBASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 AC002075.1-201ENST00000457396 676 ntBASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 AC093763.2-201ENST00000505334 1223 ntBASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 AC034244.2-201ENST00000514668 858 ntBASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 AC104997.1-201ENST00000519761 717 ntBASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 CIR1P1-201ENST00000524055 1133 ntBASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 GNG2-208ENST00000554875 430 ntTSL 5 BASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC5.56□□□□□ -1.52
ZNF549Q6P9A3 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms