Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 CNTNAP2-203ENST00000463592 6076 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
BRCA1P38398 AC016745.2-201ENST00000608834 3443 ntBASIC6.39□□□□□ -1.39
BRCA1P38398 LRRC37A9P-201ENST00000603850 5376 ntBASIC6.39□□□□□ -1.39
BRCA1P38398 AC140479.2-201ENST00000421567 3130 ntBASIC6.39□□□□□ -1.39
BRCA1P38398 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
BRCA1P38398 MIR600-201ENST00000385007 98 ntBASIC6.39□□□□□ -1.39
BRCA1P38398 GTF2IP5-201ENST00000414608 731 ntBASIC6.39□□□□□ -1.39
BRCA1P38398 LINC01047-201ENST00000415193 778 ntTSL 5 BASIC6.39□□□□□ -1.39
BRCA1P38398 RPL17P36-201ENST00000420302 549 ntBASIC6.39□□□□□ -1.39
BRCA1P38398 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC6.39□□□□□ -1.39
BRCA1P38398 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC6.39□□□□□ -1.39
BRCA1P38398 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC6.39□□□□□ -1.39
BRCA1P38398 ATP5A1P7-201ENST00000453978 1279 ntBASIC6.39□□□□□ -1.39
BRCA1P38398 AC083829.1-201ENST00000503756 657 ntBASIC6.39□□□□□ -1.39
BRCA1P38398 AC009643.1-201ENST00000532030 391 ntBASIC6.39□□□□□ -1.39
BRCA1P38398 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC6.39□□□□□ -1.39
BRCA1P38398 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC6.39□□□□□ -1.39
BRCA1P38398 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC6.39□□□□□ -1.39
BRCA1P38398 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC6.39□□□□□ -1.39
BRCA1P38398 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
BRCA1P38398 AL596275.2-208ENST00000641192 594 ntBASIC6.39□□□□□ -1.39
BRCA1P38398 PLAGL1-205ENST00000392307 6296 ntTSL 2 BASIC6.39□□□□□ -1.39
BRCA1P38398 TACC1-207ENST00000519416 5510 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
BRCA1P38398 AC107980.1-201ENST00000558671 3355 ntBASIC6.39□□□□□ -1.39
BRCA1P38398 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
BRCA1P38398 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
BRCA1P38398 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
BRCA1P38398 ZNF43-205ENST00000594012 5584 ntAPPRIS ALT2 TSL 2 BASIC6.39□□□□□ -1.39
BRCA1P38398 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
BRCA1P38398 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC6.39□□□□□ -1.39
BRCA1P38398 PRNCR1-201ENST00000635449 12727 ntBASIC6.39□□□□□ -1.39
BRCA1P38398 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
BRCA1P38398 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
BRCA1P38398 TIAM2-208ENST00000461783 6981 ntAPPRIS P1 TSL 2 BASIC6.39□□□□□ -1.39
BRCA1P38398 RSU1P3-201ENST00000412878 835 ntBASIC6.39□□□□□ -1.39
BRCA1P38398 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC6.39□□□□□ -1.39
BRCA1P38398 CCNB1IP1P2-201ENST00000432876 818 ntBASIC6.39□□□□□ -1.39
BRCA1P38398 KCTD10P1-201ENST00000434203 625 ntBASIC6.39□□□□□ -1.39
BRCA1P38398 PPIAP21-201ENST00000464473 501 ntBASIC6.39□□□□□ -1.39
BRCA1P38398 OR52A4P-201ENST00000472867 958 ntBASIC6.39□□□□□ -1.39
BRCA1P38398 NIP7P2-201ENST00000485801 544 ntBASIC6.39□□□□□ -1.39
BRCA1P38398 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC6.39□□□□□ -1.39
BRCA1P38398 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC6.39□□□□□ -1.39
BRCA1P38398 AL590392.1-201ENST00000604960 446 ntBASIC6.39□□□□□ -1.39
BRCA1P38398 MLECP1-201ENST00000615893 709 ntBASIC6.39□□□□□ -1.39
BRCA1P38398 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC6.38□□□□□ -1.39
BRCA1P38398 GON4L-201ENST00000271883 7138 ntAPPRIS P3 TSL 5 BASIC6.38□□□□□ -1.39
BRCA1P38398 ZNF407-203ENST00000577538 5794 ntAPPRIS ALT2 TSL 2 BASIC6.38□□□□□ -1.39
BRCA1P38398 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC6.38□□□□□ -1.39
BRCA1P38398 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
BRCA1P38398 GCNT3-201ENST00000396065 4933 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
BRCA1P38398 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
BRCA1P38398 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
BRCA1P38398 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC6.38□□□□□ -1.39
BRCA1P38398 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
BRCA1P38398 HYDIN-206ENST00000393567 15719 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
BRCA1P38398 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC6.38□□□□□ -1.39
BRCA1P38398 MIR1193-201ENST00000408109 78 ntBASIC6.38□□□□□ -1.39
BRCA1P38398 RNF10P1-201ENST00000418589 369 ntBASIC6.38□□□□□ -1.39
BRCA1P38398 RPS27AP6-201ENST00000427962 448 ntBASIC6.38□□□□□ -1.39
BRCA1P38398 OR52J1P-201ENST00000450596 932 ntBASIC6.38□□□□□ -1.39
BRCA1P38398 ASB8-204ENST00000536071 568 ntTSL 4 BASIC6.38□□□□□ -1.39
BRCA1P38398 AL110118.1-201ENST00000553543 400 ntBASIC6.38□□□□□ -1.39
BRCA1P38398 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
BRCA1P38398 AC125494.2-201ENST00000602431 657 ntBASIC6.38□□□□□ -1.39
BRCA1P38398 AC008814.1-201ENST00000603797 406 ntBASIC6.38□□□□□ -1.39
BRCA1P38398 AL121873.1-201ENST00000616013 524 ntBASIC6.38□□□□□ -1.39
BRCA1P38398 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC6.38□□□□□ -1.39
BRCA1P38398 PRKCA-202ENST00000413366 8751 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
BRCA1P38398 SLC7A6-209ENST00000566454 6308 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
BRCA1P38398 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
BRCA1P38398 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
BRCA1P38398 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC6.37□□□□□ -1.39
BRCA1P38398 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
BRCA1P38398 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC6.37□□□□□ -1.39
BRCA1P38398 AL451142.1-201ENST00000375867 775 ntBASIC6.37□□□□□ -1.39
BRCA1P38398 AL049697.2-201ENST00000403708 294 ntBASIC6.37□□□□□ -1.39
BRCA1P38398 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC6.37□□□□□ -1.39
BRCA1P38398 RN7SL188P-201ENST00000469842 285 ntBASIC6.37□□□□□ -1.39
BRCA1P38398 RN7SKP260-201ENST00000516907 149 ntBASIC6.37□□□□□ -1.39
BRCA1P38398 OR5D13-201ENST00000623930 945 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
BRCA1P38398 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
BRCA1P38398 PPFIA2-201ENST00000333447 5517 ntTSL 5 BASIC6.37□□□□□ -1.39
BRCA1P38398 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC6.37□□□□□ -1.39
BRCA1P38398 AC010928.1-201ENST00000592477 1447 ntBASIC6.37□□□□□ -1.39
BRCA1P38398 METTL21EP-202ENST00000605100 2312 ntTSL 2 BASIC6.37□□□□□ -1.39
BRCA1P38398 OR52K1-202ENST00000641528 5456 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
BRCA1P38398 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
BRCA1P38398 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
BRCA1P38398 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC6.37□□□□□ -1.39
BRCA1P38398 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
BRCA1P38398 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC6.37□□□□□ -1.39
BRCA1P38398 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
BRCA1P38398 PDE4DIP-206ENST00000369356 8307 ntAPPRIS P4 TSL 1 (best) BASIC6.37□□□□□ -1.39
BRCA1P38398 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
BRCA1P38398 AL137100.1-201ENST00000556703 1620 ntBASIC6.37□□□□□ -1.39
BRCA1P38398 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC6.37□□□□□ -1.39
BRCA1P38398 AL590240.1-201ENST00000334118 313 ntBASIC6.36□□□□□ -1.39
BRCA1P38398 MIR134-201ENST00000385258 73 ntBASIC6.36□□□□□ -1.39
BRCA1P38398 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC6.36□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms