Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC010350.1-201ENST00000504908 231 ntBASIC6.53□□□□□ -1.36
COL5A3P25940 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC6.53□□□□□ -1.36
COL5A3P25940 AC096736.3-201ENST00000510753 993 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A3P25940 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC6.53□□□□□ -1.36
COL5A3P25940 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC6.53□□□□□ -1.36
COL5A3P25940 BGLT3-201ENST00000564523 994 ntBASIC6.53□□□□□ -1.36
COL5A3P25940 AC011453.2-201ENST00000603737 729 ntBASIC6.53□□□□□ -1.36
COL5A3P25940 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC6.53□□□□□ -1.36
COL5A3P25940 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC6.53□□□□□ -1.36
COL5A3P25940 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
COL5A3P25940 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
COL5A3P25940 AC007620.2-201ENST00000600539 1697 ntTSL 5 BASIC6.53□□□□□ -1.36
COL5A3P25940 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A3P25940 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A3P25940 MROH9-201ENST00000367758 2227 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A3P25940 KIF1B-203ENST00000377083 5885 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A3P25940 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A3P25940 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A3P25940 CELF2-203ENST00000416382 6894 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A3P25940 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
COL5A3P25940 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
COL5A3P25940 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC6.53□□□□□ -1.36
COL5A3P25940 SLC9B1P4-201ENST00000421957 1288 ntBASIC6.53□□□□□ -1.36
COL5A3P25940 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC6.53□□□□□ -1.36
COL5A3P25940 AL137845.2-201ENST00000444292 988 ntBASIC6.53□□□□□ -1.36
COL5A3P25940 TAAR4P-201ENST00000454843 1039 ntBASIC6.53□□□□□ -1.36
COL5A3P25940 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC6.53□□□□□ -1.36
COL5A3P25940 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A3P25940 SEPT10P1-201ENST00000517342 1162 ntBASIC6.53□□□□□ -1.36
COL5A3P25940 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
COL5A3P25940 AP006289.1-201ENST00000538089 277 ntBASIC6.53□□□□□ -1.36
COL5A3P25940 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC6.53□□□□□ -1.36
COL5A3P25940 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A3P25940 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A3P25940 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC6.52□□□□□ -1.36
COL5A3P25940 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL5A3P25940 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL5A3P25940 MLLT10-202ENST00000377059 4850 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL5A3P25940 UG0898H09-202ENST00000623646 7040 ntBASIC6.52□□□□□ -1.37
COL5A3P25940 FAM186A-201ENST00000327337 7127 ntAPPRIS P2 TSL 5 BASIC6.52□□□□□ -1.37
COL5A3P25940 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL5A3P25940 AC015799.1-201ENST00000622996 3122 ntBASIC6.52□□□□□ -1.37
COL5A3P25940 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC6.52□□□□□ -1.37
COL5A3P25940 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL5A3P25940 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL5A3P25940 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL5A3P25940 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL5A3P25940 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL5A3P25940 AL049693.1-201ENST00000402760 611 ntBASIC6.52□□□□□ -1.37
COL5A3P25940 RSU1P3-201ENST00000412878 835 ntBASIC6.52□□□□□ -1.37
COL5A3P25940 HSPD1P12-201ENST00000429127 1069 ntBASIC6.52□□□□□ -1.37
COL5A3P25940 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC6.52□□□□□ -1.37
COL5A3P25940 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC6.52□□□□□ -1.37
COL5A3P25940 RPL7P40-201ENST00000481703 745 ntBASIC6.52□□□□□ -1.37
COL5A3P25940 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC6.52□□□□□ -1.37
COL5A3P25940 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC6.52□□□□□ -1.37
COL5A3P25940 MORF4L1P3-201ENST00000525966 950 ntBASIC6.52□□□□□ -1.37
COL5A3P25940 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC6.52□□□□□ -1.37
COL5A3P25940 NMNAT1P1-201ENST00000554095 876 ntBASIC6.52□□□□□ -1.37
COL5A3P25940 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC6.52□□□□□ -1.37
COL5A3P25940 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC6.52□□□□□ -1.37
COL5A3P25940 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC6.52□□□□□ -1.37
COL5A3P25940 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC6.52□□□□□ -1.37
COL5A3P25940 AC099654.6-201ENST00000636487 512 ntBASIC6.52□□□□□ -1.37
COL5A3P25940 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC6.52□□□□□ -1.37
COL5A3P25940 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC6.52□□□□□ -1.37
COL5A3P25940 SOD2-211ENST00000538183 14266 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL5A3P25940 GANC-201ENST00000318010 7781 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL5A3P25940 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL5A3P25940 ALB-219ENST00000621085 1418 ntTSL 5 BASIC6.51□□□□□ -1.37
COL5A3P25940 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COL5A3P25940 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COL5A3P25940 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL5A3P25940 AL359265.2-201ENST00000434367 631 ntBASIC6.51□□□□□ -1.37
COL5A3P25940 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC6.51□□□□□ -1.37
COL5A3P25940 TXNP5-201ENST00000441043 315 ntBASIC6.51□□□□□ -1.37
COL5A3P25940 RN7SL354P-201ENST00000469282 294 ntBASIC6.51□□□□□ -1.37
COL5A3P25940 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC6.51□□□□□ -1.37
COL5A3P25940 AP005230.1-203ENST00000582086 887 ntTSL 2 BASIC6.51□□□□□ -1.37
COL5A3P25940 SSX9-202ENST00000608568 580 ntTSL 4 BASIC6.51□□□□□ -1.37
COL5A3P25940 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC6.51□□□□□ -1.37
COL5A3P25940 AL356608.1-201ENST00000610034 820 ntBASIC6.51□□□□□ -1.37
COL5A3P25940 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COL5A3P25940 AC069542.2-201ENST00000624816 216 ntBASIC6.51□□□□□ -1.37
COL5A3P25940 USP8-204ENST00000425032 3559 ntTSL 2 BASIC6.51□□□□□ -1.37
COL5A3P25940 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COL5A3P25940 FRMD4B-210ENST00000478263 3761 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COL5A3P25940 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COL5A3P25940 AL117378.2-201ENST00000622916 1337 ntBASIC6.51□□□□□ -1.37
COL5A3P25940 GCNT3-201ENST00000396065 4933 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL5A3P25940 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC6.51□□□□□ -1.37
COL5A3P25940 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL5A3P25940 RTL9-201ENST00000465301 5426 ntAPPRIS P2 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL5A3P25940 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL5A3P25940 AC006210.2-201ENST00000367074 1545 ntBASIC6.51□□□□□ -1.37
COL5A3P25940 SIAH3-201ENST00000400405 7057 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL5A3P25940 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC6.51□□□□□ -1.37
COL5A3P25940 POLA1-201ENST00000379059 5440 ntAPPRIS P3 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL5A3P25940 POLA1-206ENST00000611764 5434 ntAPPRIS ALT2 TSL 5 BASIC6.51□□□□□ -1.37
COL5A3P25940 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC6.51□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms