Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AL389895.1-201ENST00000554127 252 ntBASIC8.18□□□□□ -1.1
COL9A1P20849 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC8.18□□□□□ -1.1
COL9A1P20849 DSG1-AS1-202ENST00000578477 588 ntTSL 3 BASIC8.18□□□□□ -1.1
COL9A1P20849 AC006116.6-201ENST00000593258 1103 ntBASIC8.18□□□□□ -1.1
COL9A1P20849 RPL26P30-202ENST00000602923 645 ntBASIC8.18□□□□□ -1.1
COL9A1P20849 AC048344.3-201ENST00000605512 251 ntBASIC8.18□□□□□ -1.1
COL9A1P20849 PRR13P7-201ENST00000605538 430 ntBASIC8.18□□□□□ -1.1
COL9A1P20849 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC8.18□□□□□ -1.1
COL9A1P20849 SLC8A1-AS1-228ENST00000627210 225 ntTSL 5 BASIC8.18□□□□□ -1.1
COL9A1P20849 ADGRE1-205ENST00000450315 2567 ntTSL 2 BASIC8.18□□□□□ -1.1
COL9A1P20849 BRCA1-208ENST00000468300 3273 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
COL9A1P20849 LINC02102-201ENST00000503989 3364 ntTSL 2 BASIC8.18□□□□□ -1.1
COL9A1P20849 TARS2P1-201ENST00000506124 2041 ntBASIC8.18□□□□□ -1.1
COL9A1P20849 CD28-201ENST00000324106 4812 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
COL9A1P20849 SLC38A2-201ENST00000256689 4888 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
COL9A1P20849 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC8.18□□□□□ -1.1
COL9A1P20849 CASC19-205ENST00000641013 1411 ntBASIC8.18□□□□□ -1.1
COL9A1P20849 NUP210L-202ENST00000368553 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC8.18□□□□□ -1.1
COL9A1P20849 TMEM35A-201ENST00000372930 2195 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
COL9A1P20849 CCDC125-203ENST00000396499 3615 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
COL9A1P20849 GBAP1-202ENST00000459805 2922 ntTSL 5 BASIC8.18□□□□□ -1.1
COL9A1P20849 FAM199X-202ENST00000493442 7457 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
COL9A1P20849 MKI67-202ENST00000368654 12678 ntAPPRIS P3 TSL 2 BASIC8.18□□□□□ -1.1
COL9A1P20849 COPS4-201ENST00000264389 1744 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
COL9A1P20849 MTOR-201ENST00000361445 8677 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
COL9A1P20849 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
COL9A1P20849 KIAA0930-202ENST00000336156 8119 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
COL9A1P20849 MTND5P10-201ENST00000603719 1809 ntBASIC8.17□□□□□ -1.1
COL9A1P20849 ACER3-212ENST00000532485 7378 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
COL9A1P20849 AC013470.2-202ENST00000635746 1895 ntAPPRIS ALT2 TSL 5 BASIC8.17□□□□□ -1.1
COL9A1P20849 MTRF1-202ENST00000379477 1948 ntAPPRIS P1 TSL 2 BASIC8.17□□□□□ -1.1
COL9A1P20849 HEATR9-207ENST00000604834 1974 ntAPPRIS P3 TSL 1 (best) BASIC8.17□□□□□ -1.1
COL9A1P20849 CASR-201ENST00000490131 4015 ntTSL 5 BASIC8.17□□□□□ -1.1
COL9A1P20849 COPG1-201ENST00000314797 3078 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
COL9A1P20849 NHLRC3-203ENST00000470258 3298 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
COL9A1P20849 TCL6-201ENST00000352367 3398 ntTSL 2 BASIC8.17□□□□□ -1.1
COL9A1P20849 R3HCC1L-203ENST00000370584 3372 ntAPPRIS P1 TSL 2 BASIC8.17□□□□□ -1.1
COL9A1P20849 PTGS2-201ENST00000367468 4514 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
COL9A1P20849 NHSL2-207ENST00000633930 13660 ntAPPRIS P1 TSL 5 BASIC8.17□□□□□ -1.1
COL9A1P20849 CSF3R-203ENST00000373103 3454 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
COL9A1P20849 AC007998.4-201ENST00000612496 2533 ntBASIC8.17□□□□□ -1.1
COL9A1P20849 RNU6-582P-201ENST00000362989 107 ntBASIC8.17□□□□□ -1.1
COL9A1P20849 RNA5SP448-201ENST00000363151 111 ntBASIC8.17□□□□□ -1.1
COL9A1P20849 FANK1-201ENST00000368689 522 ntTSL 3 BASIC8.17□□□□□ -1.1
COL9A1P20849 FCAR-205ENST00000391723 754 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
COL9A1P20849 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC8.17□□□□□ -1.1
COL9A1P20849 GNRHR-202ENST00000420975 859 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
COL9A1P20849 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC8.17□□□□□ -1.1
COL9A1P20849 AL445524.1-205ENST00000425412 392 ntTSL 2 BASIC8.17□□□□□ -1.1
COL9A1P20849 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC8.17□□□□□ -1.1
COL9A1P20849 PCBP2P1-201ENST00000437262 977 ntBASIC8.17□□□□□ -1.1
COL9A1P20849 NQO1-204ENST00000439109 924 ntTSL 2 BASIC8.17□□□□□ -1.1
COL9A1P20849 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC8.17□□□□□ -1.1
COL9A1P20849 AC097493.1-201ENST00000463958 372 ntBASIC8.17□□□□□ -1.1
COL9A1P20849 AC006539.1-201ENST00000481419 501 ntBASIC8.17□□□□□ -1.1
COL9A1P20849 AC104564.1-201ENST00000493028 407 ntBASIC8.17□□□□□ -1.1
COL9A1P20849 AC008592.1-201ENST00000503091 665 ntTSL 3 BASIC8.17□□□□□ -1.1
COL9A1P20849 RPL10P19-201ENST00000519013 301 ntBASIC8.17□□□□□ -1.1
COL9A1P20849 AC027309.2-201ENST00000520566 192 ntBASIC8.17□□□□□ -1.1
COL9A1P20849 AC012464.1-201ENST00000550687 540 ntTSL 4 BASIC8.17□□□□□ -1.1
COL9A1P20849 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC8.17□□□□□ -1.1
COL9A1P20849 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
COL9A1P20849 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC8.17□□□□□ -1.1
COL9A1P20849 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC8.17□□□□□ -1.1
COL9A1P20849 AC005410.2-201ENST00000580270 463 ntTSL 3 BASIC8.17□□□□□ -1.1
COL9A1P20849 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC8.17□□□□□ -1.1
COL9A1P20849 AC090415.1-201ENST00000581877 847 ntBASIC8.17□□□□□ -1.1
COL9A1P20849 AC011447.3-202ENST00000593655 555 ntTSL 4 BASIC8.17□□□□□ -1.1
COL9A1P20849 GMFG-204ENST00000595636 487 ntTSL 2 BASIC8.17□□□□□ -1.1
COL9A1P20849 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC8.17□□□□□ -1.1
COL9A1P20849 AC018462.2-201ENST00000605375 395 ntBASIC8.17□□□□□ -1.1
COL9A1P20849 WDR11-AS1-204ENST00000608667 522 ntTSL 5 BASIC8.17□□□□□ -1.1
COL9A1P20849 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC8.17□□□□□ -1.1
COL9A1P20849 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC8.17□□□□□ -1.1
COL9A1P20849 MIR6071-201ENST00000616741 78 ntBASIC8.17□□□□□ -1.1
COL9A1P20849 AL359757.2-201ENST00000624309 274 ntBASIC8.17□□□□□ -1.1
COL9A1P20849 TEX41-254ENST00000626394 423 ntTSL 5 BASIC8.17□□□□□ -1.1
COL9A1P20849 OR2L1P-202ENST00000641567 1023 ntBASIC8.17□□□□□ -1.1
COL9A1P20849 ATP8A2-204ENST00000381655 9575 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
COL9A1P20849 IL2RB-201ENST00000216223 4113 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
COL9A1P20849 CTNNA2-217ENST00000540488 2792 ntTSL 5 BASIC8.17□□□□□ -1.1
COL9A1P20849 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
COL9A1P20849 CYP4Z2P-202ENST00000505841 1436 ntTSL 2 BASIC8.17□□□□□ -1.1
COL9A1P20849 GTF2H2B-203ENST00000508065 1432 ntBASIC8.17□□□□□ -1.1
COL9A1P20849 BACH2-201ENST00000257749 9113 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
COL9A1P20849 C11orf88-203ENST00000529167 3099 ntAPPRIS ALT2 TSL 2 BASIC8.17□□□□□ -1.1
COL9A1P20849 PFKFB1-203ENST00000545676 1591 ntTSL 2 BASIC8.17□□□□□ -1.1
COL9A1P20849 CLDN2-203ENST00000541806 3150 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
COL9A1P20849 SH3GLB1-205ENST00000616170 6456 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
COL9A1P20849 ARHGEF7-203ENST00000375723 4957 ntTSL 5 BASIC8.17□□□□□ -1.1
COL9A1P20849 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC8.17□□□□□ -1.1
COL9A1P20849 GNG2-201ENST00000335281 3729 ntAPPRIS P1 TSL 2 BASIC8.17□□□□□ -1.1
COL9A1P20849 FGD6-205ENST00000549499 3757 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
COL9A1P20849 ERMAP-201ENST00000328249 3949 ntAPPRIS ALT2 TSL 1 (best) BASIC8.17□□□□□ -1.1
COL9A1P20849 AKAP12-203ENST00000359755 6190 ntAPPRIS ALT2 TSL 1 (best) BASIC8.17□□□□□ -1.1
COL9A1P20849 LINC02418-202ENST00000567788 4592 ntTSL 2 BASIC8.17□□□□□ -1.1
COL9A1P20849 PREPL-204ENST00000409272 3030 ntAPPRIS P1 TSL 2 BASIC8.16□□□□□ -1.1
COL9A1P20849 AC005722.2-201ENST00000577087 3370 ntBASIC8.16□□□□□ -1.1
COL9A1P20849 DMBT1-202ENST00000338354 7686 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
COL9A1P20849 DMBT1-204ENST00000368909 7686 ntAPPRIS P4 TSL 5 BASIC8.16□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 96.7 ms