Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 AL442071.1-201ENST00000289890 558 ntTSL 3 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 CRP-204ENST00000368112 787 ntTSL 2 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 MIR141-201ENST00000384975 95 ntBASIC5.72□□□□□ -1.49
COL28A1Q2UY09 U3.23-201ENST00000391132 200 ntBASIC5.72□□□□□ -1.49
COL28A1Q2UY09 AL391422.1-201ENST00000402155 436 ntBASIC5.72□□□□□ -1.49
COL28A1Q2UY09 HMGB1P20-201ENST00000402555 677 ntBASIC5.72□□□□□ -1.49
COL28A1Q2UY09 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 PPIAP10-201ENST00000438675 458 ntBASIC5.72□□□□□ -1.49
COL28A1Q2UY09 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 Z99127.2-201ENST00000441426 334 ntBASIC5.72□□□□□ -1.49
COL28A1Q2UY09 CYCSP51-201ENST00000443545 318 ntBASIC5.72□□□□□ -1.49
COL28A1Q2UY09 OR13K1P-201ENST00000444577 975 ntBASIC5.72□□□□□ -1.49
COL28A1Q2UY09 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 RANP2-201ENST00000456833 229 ntBASIC5.72□□□□□ -1.49
COL28A1Q2UY09 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 AC008628.1-201ENST00000508663 265 ntBASIC5.72□□□□□ -1.49
COL28A1Q2UY09 RN7SKP66-201ENST00000516681 231 ntBASIC5.72□□□□□ -1.49
COL28A1Q2UY09 RNA5SP400-201ENST00000517155 111 ntBASIC5.72□□□□□ -1.49
COL28A1Q2UY09 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 ASB8-215ENST00000540782 659 ntTSL 3 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 AL136520.1-202ENST00000555494 763 ntBASIC5.72□□□□□ -1.49
COL28A1Q2UY09 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 RN7SL708P-201ENST00000580952 299 ntBASIC5.72□□□□□ -1.49
COL28A1Q2UY09 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 AP001267.4-201ENST00000602598 545 ntBASIC5.72□□□□□ -1.49
COL28A1Q2UY09 OR4H6P-202ENST00000603819 340 ntBASIC5.72□□□□□ -1.49
COL28A1Q2UY09 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC5.72□□□□□ -1.49
COL28A1Q2UY09 AL049539.1-201ENST00000611964 459 ntBASIC5.72□□□□□ -1.49
COL28A1Q2UY09 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 AC022726.2-201ENST00000634673 547 ntBASIC5.72□□□□□ -1.49
COL28A1Q2UY09 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 POT1-202ENST00000393329 3950 ntTSL 5 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 AC116158.1-201ENST00000560231 2129 ntBASIC5.72□□□□□ -1.49
COL28A1Q2UY09 AC023421.1-201ENST00000590535 1785 ntBASIC5.72□□□□□ -1.49
COL28A1Q2UY09 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 AC022325.1-201ENST00000502748 2199 ntBASIC5.72□□□□□ -1.49
COL28A1Q2UY09 AL121839.2-201ENST00000565058 6943 ntBASIC5.71□□□□□ -1.49
COL28A1Q2UY09 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.71□□□□□ -1.49
COL28A1Q2UY09 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC5.71□□□□□ -1.49
COL28A1Q2UY09 LINC02019-201ENST00000608605 2060 ntBASIC5.71□□□□□ -1.49
COL28A1Q2UY09 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC5.71□□□□□ -1.49
COL28A1Q2UY09 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.49
COL28A1Q2UY09 AC011416.1-201ENST00000514947 1732 ntBASIC5.71□□□□□ -1.49
COL28A1Q2UY09 DDX18P6-201ENST00000450119 1997 ntBASIC5.71□□□□□ -1.49
COL28A1Q2UY09 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.71□□□□□ -1.49
COL28A1Q2UY09 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
COL28A1Q2UY09 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 ATP5A1P4-201ENST00000556888 1605 ntBASIC5.71□□□□□ -1.5
COL28A1Q2UY09 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 GNG5P2-201ENST00000372054 207 ntBASIC5.71□□□□□ -1.5
COL28A1Q2UY09 CAV1-204ENST00000393470 598 ntTSL 4 BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 RPL23AP17-201ENST00000401064 499 ntBASIC5.71□□□□□ -1.5
COL28A1Q2UY09 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 HMGA1P8-201ENST00000414130 321 ntBASIC5.71□□□□□ -1.5
COL28A1Q2UY09 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 BMS1P17-202ENST00000416720 316 ntBASIC5.71□□□□□ -1.5
COL28A1Q2UY09 AL662874.1-201ENST00000426065 230 ntBASIC5.71□□□□□ -1.5
COL28A1Q2UY09 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 TRIM60P16-201ENST00000444048 694 ntBASIC5.71□□□□□ -1.5
COL28A1Q2UY09 LRRC37A14P-201ENST00000452297 462 ntBASIC5.71□□□□□ -1.5
COL28A1Q2UY09 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 AC093890.1-201ENST00000502554 540 ntBASIC5.71□□□□□ -1.5
COL28A1Q2UY09 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 MTND1P36-201ENST00000522384 936 ntBASIC5.71□□□□□ -1.5
COL28A1Q2UY09 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 BICD1-206ENST00000551086 423 ntTSL 3 BASIC5.71□□□□□ -1.5
COL28A1Q2UY09 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms