Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC5.34□□□□□ -1.55
COL6A3P12111 B3GALT1-201ENST00000392690 5094 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
COL6A3P12111 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
COL6A3P12111 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.56
COL6A3P12111 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
COL6A3P12111 SORBS1-202ENST00000306402 5858 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.56
COL6A3P12111 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.56
COL6A3P12111 RAB9AP4-201ENST00000415230 609 ntBASIC5.34□□□□□ -1.56
COL6A3P12111 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.34□□□□□ -1.56
COL6A3P12111 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC5.34□□□□□ -1.56
COL6A3P12111 RNU2-30P-201ENST00000516209 141 ntBASIC5.34□□□□□ -1.56
COL6A3P12111 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC5.34□□□□□ -1.56
COL6A3P12111 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC5.34□□□□□ -1.56
COL6A3P12111 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC5.34□□□□□ -1.56
COL6A3P12111 AP000350.7-201ENST00000624923 8030 ntBASIC5.34□□□□□ -1.56
COL6A3P12111 RAD17P1-201ENST00000418130 2042 ntBASIC5.34□□□□□ -1.56
COL6A3P12111 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL6A3P12111 PRDM10-207ENST00000528746 6182 ntTSL 5 BASIC5.33□□□□□ -1.56
COL6A3P12111 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.33□□□□□ -1.56
COL6A3P12111 NCAM1-222ENST00000615285 6045 ntTSL 5 BASIC5.33□□□□□ -1.56
COL6A3P12111 AL121722.1-201ENST00000638550 4849 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
COL6A3P12111 ERG-206ENST00000398911 4914 ntTSL 5 BASIC5.33□□□□□ -1.56
COL6A3P12111 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL6A3P12111 LINC01291-202ENST00000418204 441 ntTSL 5 BASIC5.33□□□□□ -1.56
COL6A3P12111 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
COL6A3P12111 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC5.33□□□□□ -1.56
COL6A3P12111 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
COL6A3P12111 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC5.33□□□□□ -1.56
COL6A3P12111 AC058823.1-201ENST00000485315 474 ntBASIC5.33□□□□□ -1.56
COL6A3P12111 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC5.33□□□□□ -1.56
COL6A3P12111 PDCD6IPP2-207ENST00000566321 1069 ntBASIC5.33□□□□□ -1.56
COL6A3P12111 DHFRP1-201ENST00000579682 559 ntBASIC5.33□□□□□ -1.56
COL6A3P12111 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC5.33□□□□□ -1.56
COL6A3P12111 AC007179.3-201ENST00000604976 235 ntBASIC5.33□□□□□ -1.56
COL6A3P12111 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC5.33□□□□□ -1.56
COL6A3P12111 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL6A3P12111 AC021422.1-201ENST00000621212 473 ntBASIC5.33□□□□□ -1.56
COL6A3P12111 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.33□□□□□ -1.56
COL6A3P12111 ZNF175-201ENST00000262259 6535 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL6A3P12111 PDGFRA-206ENST00000508170 2202 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL6A3P12111 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL6A3P12111 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC5.33□□□□□ -1.56
COL6A3P12111 ACACB-203ENST00000377854 6588 ntTSL 5 BASIC5.33□□□□□ -1.56
COL6A3P12111 SFTPD-AS1-201ENST00000608229 5001 ntBASIC5.33□□□□□ -1.56
COL6A3P12111 GRIK2-207ENST00000421544 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL6A3P12111 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL6A3P12111 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL6A3P12111 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
COL6A3P12111 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL6A3P12111 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL6A3P12111 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC5.33□□□□□ -1.56
COL6A3P12111 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC5.33□□□□□ -1.56
COL6A3P12111 LINC02257-201ENST00000412445 605 ntTSL 2 BASIC5.33□□□□□ -1.56
COL6A3P12111 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC5.33□□□□□ -1.56
COL6A3P12111 RPL23AP56-201ENST00000460778 453 ntBASIC5.33□□□□□ -1.56
COL6A3P12111 CYP4F27P-201ENST00000514557 494 ntBASIC5.33□□□□□ -1.56
COL6A3P12111 IGHVIII-13-1-201ENST00000517613 291 ntBASIC5.33□□□□□ -1.56
COL6A3P12111 AL121594.2-201ENST00000541658 472 ntBASIC5.33□□□□□ -1.56
COL6A3P12111 AC073091.2-201ENST00000603205 907 ntBASIC5.33□□□□□ -1.56
COL6A3P12111 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC5.33□□□□□ -1.56
COL6A3P12111 ZNF271P-201ENST00000399070 5124 ntTSL 2 BASIC5.33□□□□□ -1.56
COL6A3P12111 PDGFC-203ENST00000502773 4165 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL6A3P12111 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
COL6A3P12111 FMNL3-201ENST00000335154 12634 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL6A3P12111 PTPN3-201ENST00000262539 6832 ntTSL 5 BASIC5.33□□□□□ -1.56
COL6A3P12111 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
COL6A3P12111 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL6A3P12111 KIAA0319-206ENST00000616673 5315 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL6A3P12111 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
COL6A3P12111 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL6A3P12111 TRPM1-202ENST00000397795 5687 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL6A3P12111 PTPRB-204ENST00000538708 5839 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL6A3P12111 PTPRB-209ENST00000550857 5839 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL6A3P12111 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL6A3P12111 AL590240.1-201ENST00000334118 313 ntBASIC5.32□□□□□ -1.56
COL6A3P12111 RNA5SP326-201ENST00000363209 110 ntBASIC5.32□□□□□ -1.56
COL6A3P12111 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC5.32□□□□□ -1.56
COL6A3P12111 SPTAN1-202ENST00000372731 7889 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL6A3P12111 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
COL6A3P12111 RN7SKP202-201ENST00000410439 330 ntBASIC5.32□□□□□ -1.56
COL6A3P12111 MTCO1P54-201ENST00000430139 712 ntBASIC5.32□□□□□ -1.56
COL6A3P12111 SCARNA22-201ENST00000503991 125 ntBASIC5.32□□□□□ -1.56
COL6A3P12111 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC5.32□□□□□ -1.56
COL6A3P12111 RN7SL435P-201ENST00000584418 282 ntBASIC5.32□□□□□ -1.56
COL6A3P12111 AC008782.1-201ENST00000603386 430 ntBASIC5.32□□□□□ -1.56
COL6A3P12111 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC5.32□□□□□ -1.56
COL6A3P12111 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
COL6A3P12111 PLEKHA5-213ENST00000538714 6487 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL6A3P12111 HBS1L-205ENST00000367837 7163 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL6A3P12111 PRDM10-202ENST00000358825 6322 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
COL6A3P12111 PRDM10-203ENST00000360871 6301 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL6A3P12111 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC5.32□□□□□ -1.56
COL6A3P12111 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC5.32□□□□□ -1.56
COL6A3P12111 AC016831.4-201ENST00000438302 307 ntBASIC5.32□□□□□ -1.56
COL6A3P12111 AC010733.1-201ENST00000451515 401 ntBASIC5.32□□□□□ -1.56
COL6A3P12111 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC5.32□□□□□ -1.56
COL6A3P12111 snoU13.29-201ENST00000459370 104 ntBASIC5.32□□□□□ -1.56
COL6A3P12111 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC5.32□□□□□ -1.56
COL6A3P12111 TTLL4-201ENST00000258398 4730 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
COL6A3P12111 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms