Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 EMX2OS-206ENST00000551288 7280 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL4A1P02462 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL4A1P02462 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL4A1P02462 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL4A1P02462 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL4A1P02462 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
COL4A1P02462 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL4A1P02462 RNA5SP191-201ENST00000362585 102 ntBASIC6.36□□□□□ -1.39
COL4A1P02462 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
COL4A1P02462 SNORA70.9-201ENST00000384370 135 ntBASIC6.36□□□□□ -1.39
COL4A1P02462 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC6.36□□□□□ -1.39
COL4A1P02462 AL590139.1-201ENST00000416267 400 ntBASIC6.36□□□□□ -1.39
COL4A1P02462 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC6.36□□□□□ -1.39
COL4A1P02462 AC006466.1-201ENST00000438721 289 ntBASIC6.36□□□□□ -1.39
COL4A1P02462 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC6.36□□□□□ -1.39
COL4A1P02462 H3F3BP1-201ENST00000440551 403 ntBASIC6.36□□□□□ -1.39
COL4A1P02462 RPL7AP61-201ENST00000443410 636 ntBASIC6.36□□□□□ -1.39
COL4A1P02462 AC079168.1-201ENST00000458741 345 ntBASIC6.36□□□□□ -1.39
COL4A1P02462 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC6.36□□□□□ -1.39
COL4A1P02462 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC6.36□□□□□ -1.39
COL4A1P02462 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC6.36□□□□□ -1.39
COL4A1P02462 AC008033.2-201ENST00000542626 177 ntBASIC6.36□□□□□ -1.39
COL4A1P02462 FCF1-203ENST00000553615 954 ntTSL 3 BASIC6.36□□□□□ -1.39
COL4A1P02462 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC6.36□□□□□ -1.39
COL4A1P02462 OR9K1P-202ENST00000641111 3217 ntBASIC6.36□□□□□ -1.39
COL4A1P02462 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC6.35□□□□□ -1.39
COL4A1P02462 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC6.35□□□□□ -1.39
COL4A1P02462 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COL4A1P02462 DCX-208ENST00000636035 9269 ntAPPRIS ALT1 TSL 2 BASIC6.35□□□□□ -1.39
COL4A1P02462 DOCK8-204ENST00000432829 7452 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL4A1P02462 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC6.35□□□□□ -1.39
COL4A1P02462 ANKFY1-201ENST00000341657 7418 ntAPPRIS ALT1 TSL 5 BASIC6.35□□□□□ -1.39
COL4A1P02462 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL4A1P02462 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL4A1P02462 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC6.35□□□□□ -1.39
COL4A1P02462 RNU1-74P-201ENST00000384108 171 ntBASIC6.35□□□□□ -1.39
COL4A1P02462 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL4A1P02462 CHMP1B2P-201ENST00000399581 597 ntBASIC6.35□□□□□ -1.39
COL4A1P02462 AL590399.4-201ENST00000436561 601 ntBASIC6.35□□□□□ -1.39
COL4A1P02462 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC6.35□□□□□ -1.39
COL4A1P02462 AC009220.1-201ENST00000451614 275 ntBASIC6.35□□□□□ -1.39
COL4A1P02462 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC6.35□□□□□ -1.39
COL4A1P02462 AC090142.2-201ENST00000483263 416 ntBASIC6.35□□□□□ -1.39
COL4A1P02462 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
COL4A1P02462 COX6B1P5-201ENST00000509843 249 ntBASIC6.35□□□□□ -1.39
COL4A1P02462 OR7E128P-201ENST00000532736 1024 ntBASIC6.35□□□□□ -1.39
COL4A1P02462 MIR4737-201ENST00000583979 81 ntBASIC6.35□□□□□ -1.39
COL4A1P02462 UBA2-208ENST00000592791 910 ntTSL 2 BASIC6.35□□□□□ -1.39
COL4A1P02462 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC6.35□□□□□ -1.39
COL4A1P02462 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC6.35□□□□□ -1.39
COL4A1P02462 HTT-201ENST00000355072 13474 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL4A1P02462 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL4A1P02462 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
COL4A1P02462 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL4A1P02462 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC6.34□□□□□ -1.39
COL4A1P02462 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL4A1P02462 MAP4K4-219ENST00000625522 7458 ntAPPRIS P5 TSL 5 BASIC6.34□□□□□ -1.39
COL4A1P02462 GMDS-AS1-202ENST00000505870 8217 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
COL4A1P02462 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC6.34□□□□□ -1.39
COL4A1P02462 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC6.34□□□□□ -1.39
COL4A1P02462 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL4A1P02462 RN7SKP145-201ENST00000363291 303 ntBASIC6.34□□□□□ -1.39
COL4A1P02462 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL4A1P02462 HSPA8P15-201ENST00000401676 786 ntBASIC6.34□□□□□ -1.39
COL4A1P02462 SNORA77-201ENST00000408716 125 ntBASIC6.34□□□□□ -1.39
COL4A1P02462 RN7SKP114-201ENST00000410327 279 ntBASIC6.34□□□□□ -1.39
COL4A1P02462 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC6.34□□□□□ -1.39
COL4A1P02462 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC6.34□□□□□ -1.39
COL4A1P02462 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC6.34□□□□□ -1.39
COL4A1P02462 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC6.34□□□□□ -1.39
COL4A1P02462 RPL5P25-201ENST00000441148 775 ntBASIC6.34□□□□□ -1.39
COL4A1P02462 GYG1P1-201ENST00000460864 698 ntBASIC6.34□□□□□ -1.39
COL4A1P02462 AC063943.1-201ENST00000465434 453 ntBASIC6.34□□□□□ -1.39
COL4A1P02462 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC6.34□□□□□ -1.39
COL4A1P02462 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL4A1P02462 OR51K1P-201ENST00000510214 950 ntBASIC6.34□□□□□ -1.39
COL4A1P02462 IMPA1P1-201ENST00000510718 842 ntBASIC6.34□□□□□ -1.39
COL4A1P02462 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC6.34□□□□□ -1.39
COL4A1P02462 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC6.34□□□□□ -1.39
COL4A1P02462 AC005377.1-201ENST00000605126 456 ntBASIC6.34□□□□□ -1.39
COL4A1P02462 SLC8A1-AS1-218ENST00000610721 956 ntTSL 5 BASIC6.34□□□□□ -1.39
COL4A1P02462 AC010632.3-201ENST00000611377 369 ntBASIC6.34□□□□□ -1.39
COL4A1P02462 CASR-205ENST00000639785 10047 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL4A1P02462 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
COL4A1P02462 WNT2B-203ENST00000369686 10879 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
COL4A1P02462 PROX1-201ENST00000261454 8170 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL4A1P02462 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC6.34□□□□□ -1.39
COL4A1P02462 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL4A1P02462 ABLIM1-214ENST00000533213 7606 ntTSL 5 BASIC6.34□□□□□ -1.39
COL4A1P02462 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
COL4A1P02462 HMCN2-206ENST00000624552 15610 ntAPPRIS P1 TSL 5 BASIC6.34□□□□□ -1.39
COL4A1P02462 FSTL5-202ENST00000379164 4757 ntAPPRIS ALT1 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL4A1P02462 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC6.34□□□□□ -1.39
COL4A1P02462 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.4
COL4A1P02462 OR10A2-202ENST00000641461 5390 ntAPPRIS P1 BASIC6.34□□□□□ -1.4
COL4A1P02462 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC6.34□□□□□ -1.4
COL4A1P02462 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC6.34□□□□□ -1.4
COL4A1P02462 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
COL4A1P02462 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC6.34□□□□□ -1.4
COL4A1P02462 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 91.7 ms