Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 NCKAP5-201ENST00000317721 7593 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
HSPG2P98160 NCKAP5-205ENST00000409261 7594 ntAPPRIS P4 TSL 5 BASIC3.2□□□□□ -1.9
HSPG2P98160 HBS1L-205ENST00000367837 7163 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HSPG2P98160 NDUFA5P8-201ENST00000449019 346 ntBASIC3.2□□□□□ -1.9
HSPG2P98160 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC3.2□□□□□ -1.9
HSPG2P98160 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC3.2□□□□□ -1.9
HSPG2P98160 RPS17P5-201ENST00000498293 408 ntBASIC3.2□□□□□ -1.9
HSPG2P98160 RN7SKP276-201ENST00000516242 268 ntBASIC3.2□□□□□ -1.9
HSPG2P98160 OR8A2P-201ENST00000528631 952 ntBASIC3.2□□□□□ -1.9
HSPG2P98160 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC3.2□□□□□ -1.9
HSPG2P98160 AC008814.1-201ENST00000603797 406 ntBASIC3.2□□□□□ -1.9
HSPG2P98160 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC3.2□□□□□ -1.9
HSPG2P98160 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC3.2□□□□□ -1.9
HSPG2P98160 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
HSPG2P98160 ZNF229-204ENST00000614049 4507 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
HSPG2P98160 MEF2C-209ENST00000504921 7561 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
HSPG2P98160 ARMCX5-202ENST00000372742 2647 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
HSPG2P98160 NEMP2-202ENST00000409150 6168 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
HSPG2P98160 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC3.2□□□□□ -1.9
HSPG2P98160 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
HSPG2P98160 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HSPG2P98160 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC3.2□□□□□ -1.9
HSPG2P98160 EYA3-208ENST00000540618 5885 ntTSL 2 BASIC3.2□□□□□ -1.9
HSPG2P98160 LAMA1-201ENST00000389658 9657 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HSPG2P98160 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC3.2□□□□□ -1.9
HSPG2P98160 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
HSPG2P98160 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
HSPG2P98160 MTAP-201ENST00000380172 6122 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HSPG2P98160 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
HSPG2P98160 RNA5SP251-201ENST00000410614 137 ntBASIC3.2□□□□□ -1.9
HSPG2P98160 AL645608.4-201ENST00000423619 154 ntBASIC3.2□□□□□ -1.9
HSPG2P98160 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC3.2□□□□□ -1.9
HSPG2P98160 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC3.2□□□□□ -1.9
HSPG2P98160 RPS29P10-201ENST00000439197 166 ntBASIC3.2□□□□□ -1.9
HSPG2P98160 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.2□□□□□ -1.9
HSPG2P98160 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
HSPG2P98160 AL591034.3-201ENST00000605511 685 ntBASIC3.2□□□□□ -1.9
HSPG2P98160 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC3.2□□□□□ -1.9
HSPG2P98160 UBA3-213ENST00000631029 123 ntTSL 5 BASIC3.2□□□□□ -1.9
HSPG2P98160 ATP5A1P1-201ENST00000454088 1321 ntBASIC3.2□□□□□ -1.9
HSPG2P98160 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
HSPG2P98160 RAB11A-201ENST00000261890 4930 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HSPG2P98160 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC3.2□□□□□ -1.9
HSPG2P98160 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
HSPG2P98160 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC3.2□□□□□ -1.9
HSPG2P98160 OR2F1-203ENST00000641412 4829 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
HSPG2P98160 DOCK3-201ENST00000266037 8755 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HSPG2P98160 WDR7-202ENST00000357574 7213 ntTSL 5 BASIC3.2□□□□□ -1.9
HSPG2P98160 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC3.19□□□□□ -1.9
HSPG2P98160 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC3.19□□□□□ -1.9
HSPG2P98160 IL22RA2-203ENST00000349184 2801 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HSPG2P98160 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC3.19□□□□□ -1.9
HSPG2P98160 CHCHD7-203ENST00000396723 1550 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HSPG2P98160 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HSPG2P98160 AGL-201ENST00000294724 7446 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HSPG2P98160 STON2-206ENST00000555447 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
HSPG2P98160 LINC01291-202ENST00000418204 441 ntTSL 5 BASIC3.19□□□□□ -1.9
HSPG2P98160 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC3.19□□□□□ -1.9
HSPG2P98160 USP24P1-201ENST00000433802 779 ntBASIC3.19□□□□□ -1.9
HSPG2P98160 PRSS3P4-201ENST00000453323 162 ntBASIC3.19□□□□□ -1.9
HSPG2P98160 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HSPG2P98160 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC3.19□□□□□ -1.9
HSPG2P98160 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC3.19□□□□□ -1.9
HSPG2P98160 RPL7P50-201ENST00000600588 727 ntBASIC3.19□□□□□ -1.9
HSPG2P98160 IGKV1OR2-9-201ENST00000603957 287 ntBASIC3.19□□□□□ -1.9
HSPG2P98160 IGKV1OR2-11-201ENST00000604120 287 ntBASIC3.19□□□□□ -1.9
HSPG2P98160 CR381572.2-201ENST00000624852 397 ntBASIC3.19□□□□□ -1.9
HSPG2P98160 MAML2-202ENST00000618849 3154 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HSPG2P98160 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HSPG2P98160 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HSPG2P98160 CHST12-201ENST00000258711 15979 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HSPG2P98160 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC3.19□□□□□ -1.9
HSPG2P98160 FRMD6-202ENST00000356218 4768 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HSPG2P98160 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC3.19□□□□□ -1.9
HSPG2P98160 AC099654.2-201ENST00000433031 1980 ntBASIC3.19□□□□□ -1.9
HSPG2P98160 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HSPG2P98160 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
HSPG2P98160 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
HSPG2P98160 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC3.19□□□□□ -1.9
HSPG2P98160 MTR-202ENST00000366577 10529 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HSPG2P98160 ERC1-202ENST00000355446 5796 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HSPG2P98160 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HSPG2P98160 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
HSPG2P98160 RPL36AP36-201ENST00000418616 301 ntBASIC3.19□□□□□ -1.9
HSPG2P98160 MRPL35P2-201ENST00000448009 511 ntBASIC3.19□□□□□ -1.9
HSPG2P98160 XIST-210ENST00000602863 775 ntTSL 3 BASIC3.19□□□□□ -1.9
HSPG2P98160 AL138960.1-201ENST00000613838 513 ntBASIC3.19□□□□□ -1.9
HSPG2P98160 ATP8A2-204ENST00000381655 9575 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HSPG2P98160 NAT1-210ENST00000545197 1827 ntTSL 5 BASIC3.19□□□□□ -1.9
HSPG2P98160 MAK-202ENST00000354489 3941 ntTSL 5 BASIC3.19□□□□□ -1.9
HSPG2P98160 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HSPG2P98160 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HSPG2P98160 CACNA1D-203ENST00000422281 6414 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
HSPG2P98160 CACNA1D-211ENST00000636570 6441 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
HSPG2P98160 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HSPG2P98160 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC3.19□□□□□ -1.9
HSPG2P98160 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HSPG2P98160 AC063976.2-201ENST00000425667 3556 ntBASIC3.19□□□□□ -1.9
HSPG2P98160 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HSPG2P98160 SAMMSON-210ENST00000641260 1308 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms