Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC6.9□□□□□ -1.3
COL18A1P39060 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC6.9□□□□□ -1.3
COL18A1P39060 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
COL18A1P39060 DLC1-201ENST00000276297 7447 ntAPPRIS P4 TSL 1 (best) BASIC6.9□□□□□ -1.3
COL18A1P39060 PRRC1-204ENST00000512635 2726 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
COL18A1P39060 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC6.9□□□□□ -1.3
COL18A1P39060 FAM3C2-201ENST00000312214 681 ntBASIC6.9□□□□□ -1.3
COL18A1P39060 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC6.9□□□□□ -1.3
COL18A1P39060 RPS4XP9-201ENST00000405151 780 ntBASIC6.9□□□□□ -1.3
COL18A1P39060 AC092570.3-201ENST00000420113 693 ntBASIC6.9□□□□□ -1.3
COL18A1P39060 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC6.9□□□□□ -1.3
COL18A1P39060 OR7E125P-201ENST00000443450 846 ntBASIC6.9□□□□□ -1.3
COL18A1P39060 AL356981.1-201ENST00000454879 684 ntBASIC6.9□□□□□ -1.3
COL18A1P39060 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC6.9□□□□□ -1.3
COL18A1P39060 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC6.9□□□□□ -1.3
COL18A1P39060 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC6.9□□□□□ -1.3
COL18A1P39060 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC6.9□□□□□ -1.3
COL18A1P39060 AC091042.1-201ENST00000579213 173 ntBASIC6.9□□□□□ -1.3
COL18A1P39060 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC6.9□□□□□ -1.3
COL18A1P39060 AL161616.1-201ENST00000611867 286 ntBASIC6.9□□□□□ -1.3
COL18A1P39060 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC6.9□□□□□ -1.3
COL18A1P39060 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC6.9□□□□□ -1.3
COL18A1P39060 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC6.9□□□□□ -1.3
COL18A1P39060 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
COL18A1P39060 KLF7-201ENST00000309446 8362 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
COL18A1P39060 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC6.9□□□□□ -1.3
COL18A1P39060 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
COL18A1P39060 AC079097.1-201ENST00000512187 1399 ntBASIC6.9□□□□□ -1.3
COL18A1P39060 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
COL18A1P39060 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC6.9□□□□□ -1.3
COL18A1P39060 MAPRE2-203ENST00000436190 4323 ntTSL 2 BASIC6.9□□□□□ -1.31
COL18A1P39060 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
COL18A1P39060 ZSCAN12-201ENST00000361028 5495 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
COL18A1P39060 OLFM4-201ENST00000219022 2897 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
COL18A1P39060 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC6.9□□□□□ -1.31
COL18A1P39060 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC6.9□□□□□ -1.31
COL18A1P39060 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC6.9□□□□□ -1.31
COL18A1P39060 HSPA8P15-201ENST00000401676 786 ntBASIC6.9□□□□□ -1.31
COL18A1P39060 AC073072.2-201ENST00000447425 348 ntBASIC6.9□□□□□ -1.31
COL18A1P39060 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC6.9□□□□□ -1.31
COL18A1P39060 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC6.9□□□□□ -1.31
COL18A1P39060 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC6.9□□□□□ -1.31
COL18A1P39060 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC6.9□□□□□ -1.31
COL18A1P39060 MIR3667-201ENST00000581025 74 ntBASIC6.9□□□□□ -1.31
COL18A1P39060 AC009027.1-201ENST00000604510 479 ntBASIC6.9□□□□□ -1.31
COL18A1P39060 AL023583.1-201ENST00000607518 1143 ntBASIC6.9□□□□□ -1.31
COL18A1P39060 AC015712.7-201ENST00000615211 635 ntBASIC6.9□□□□□ -1.31
COL18A1P39060 OR5D13-201ENST00000623930 945 ntAPPRIS P1 BASIC6.9□□□□□ -1.31
COL18A1P39060 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL18A1P39060 RIF1-206ENST00000453091 8053 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL18A1P39060 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL18A1P39060 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
COL18A1P39060 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL18A1P39060 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL18A1P39060 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC6.89□□□□□ -1.31
COL18A1P39060 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
COL18A1P39060 GJC1-202ENST00000426548 7640 ntAPPRIS P1 TSL 3 BASIC6.89□□□□□ -1.31
COL18A1P39060 DNAJA1P3-201ENST00000399417 1194 ntBASIC6.89□□□□□ -1.31
COL18A1P39060 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC6.89□□□□□ -1.31
COL18A1P39060 AC124944.2-201ENST00000429866 1242 ntBASIC6.89□□□□□ -1.31
COL18A1P39060 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC6.89□□□□□ -1.31
COL18A1P39060 NDUFA12P1-201ENST00000455914 406 ntBASIC6.89□□□□□ -1.31
COL18A1P39060 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC6.89□□□□□ -1.31
COL18A1P39060 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC6.89□□□□□ -1.31
COL18A1P39060 RNA5SP392-201ENST00000516905 112 ntBASIC6.89□□□□□ -1.31
COL18A1P39060 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC6.89□□□□□ -1.31
COL18A1P39060 AC098935.2-201ENST00000604222 466 ntBASIC6.89□□□□□ -1.31
COL18A1P39060 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL18A1P39060 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL18A1P39060 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL18A1P39060 TNPO1-201ENST00000337273 11183 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL18A1P39060 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC6.89□□□□□ -1.31
COL18A1P39060 AL132640.2-201ENST00000559968 1698 ntBASIC6.88□□□□□ -1.31
COL18A1P39060 AC010329.1-201ENST00000593903 8328 ntBASIC6.88□□□□□ -1.31
COL18A1P39060 SLC30A8-205ENST00000519688 5242 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
COL18A1P39060 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC6.88□□□□□ -1.31
COL18A1P39060 REST-201ENST00000309042 7300 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
COL18A1P39060 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
COL18A1P39060 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC6.88□□□□□ -1.31
COL18A1P39060 AC004074.1-201ENST00000421810 1063 ntBASIC6.88□□□□□ -1.31
COL18A1P39060 AC007559.1-201ENST00000428736 355 ntBASIC6.88□□□□□ -1.31
COL18A1P39060 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC6.88□□□□□ -1.31
COL18A1P39060 RN7SL385P-201ENST00000468873 276 ntBASIC6.88□□□□□ -1.31
COL18A1P39060 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC6.88□□□□□ -1.31
COL18A1P39060 AC105254.2-201ENST00000603636 436 ntBASIC6.88□□□□□ -1.31
COL18A1P39060 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC6.88□□□□□ -1.31
COL18A1P39060 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC6.88□□□□□ -1.31
COL18A1P39060 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC6.88□□□□□ -1.31
COL18A1P39060 GANC-201ENST00000318010 7781 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
COL18A1P39060 SERPINB11-205ENST00000544088 1846 ntAPPRIS P1 TSL 2 BASIC6.88□□□□□ -1.31
COL18A1P39060 IGF1R-206ENST00000558762 11726 ntAPPRIS ALT1 TSL 1 (best) BASIC6.88□□□□□ -1.31
COL18A1P39060 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC6.88□□□□□ -1.31
COL18A1P39060 AC003973.3-201ENST00000624863 2822 ntBASIC6.88□□□□□ -1.31
COL18A1P39060 SECISBP2L-209ENST00000559471 7176 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.31
COL18A1P39060 OTX2-AS1-201ENST00000534909 2428 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
COL18A1P39060 NUP107-201ENST00000229179 6457 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
COL18A1P39060 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC6.88□□□□□ -1.31
COL18A1P39060 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
COL18A1P39060 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC6.88□□□□□ -1.31
COL18A1P39060 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms