Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 HYDIN-206ENST00000393567 15719 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
COL4A1P02462 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL4A1P02462 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL4A1P02462 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL4A1P02462 AC015849.5-201ENST00000604907 5473 ntTSL 2 BASIC6.39□□□□□ -1.39
COL4A1P02462 RN7SKP185-201ENST00000362813 326 ntBASIC6.39□□□□□ -1.39
COL4A1P02462 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
COL4A1P02462 RPL10P10-201ENST00000403509 664 ntBASIC6.39□□□□□ -1.39
COL4A1P02462 NUDT19P3-201ENST00000404698 555 ntBASIC6.39□□□□□ -1.39
COL4A1P02462 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC6.39□□□□□ -1.39
COL4A1P02462 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC6.39□□□□□ -1.39
COL4A1P02462 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC6.39□□□□□ -1.39
COL4A1P02462 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC6.39□□□□□ -1.39
COL4A1P02462 REG1CP-206ENST00000447469 496 ntBASIC6.39□□□□□ -1.39
COL4A1P02462 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC6.39□□□□□ -1.39
COL4A1P02462 HMGN1P9-201ENST00000515212 298 ntBASIC6.39□□□□□ -1.39
COL4A1P02462 OR4A17P-201ENST00000526032 904 ntBASIC6.39□□□□□ -1.39
COL4A1P02462 AP001804.1-201ENST00000526868 919 ntBASIC6.39□□□□□ -1.39
COL4A1P02462 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL4A1P02462 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC6.39□□□□□ -1.39
COL4A1P02462 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC6.39□□□□□ -1.39
COL4A1P02462 TMEM192-201ENST00000306480 10012 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL4A1P02462 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
COL4A1P02462 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL4A1P02462 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL4A1P02462 SOX6-202ENST00000396356 8865 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL4A1P02462 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC6.38□□□□□ -1.39
COL4A1P02462 PHIP-201ENST00000275034 10460 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL4A1P02462 KLF7-201ENST00000309446 8362 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL4A1P02462 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL4A1P02462 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL4A1P02462 CD109-203ENST00000437994 9401 ntAPPRIS ALT1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL4A1P02462 TTC3P1-201ENST00000399586 6081 ntBASIC6.38□□□□□ -1.39
COL4A1P02462 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
COL4A1P02462 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC6.38□□□□□ -1.39
COL4A1P02462 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC6.38□□□□□ -1.39
COL4A1P02462 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC6.38□□□□□ -1.39
COL4A1P02462 RN7SL738P-201ENST00000470264 297 ntBASIC6.38□□□□□ -1.39
COL4A1P02462 RN7SL346P-201ENST00000491561 294 ntBASIC6.38□□□□□ -1.39
COL4A1P02462 KRTAP5-14P-201ENST00000502328 121 ntBASIC6.38□□□□□ -1.39
COL4A1P02462 IGBP1P4-201ENST00000503202 879 ntBASIC6.38□□□□□ -1.39
COL4A1P02462 AC006427.1-201ENST00000514359 712 ntBASIC6.38□□□□□ -1.39
COL4A1P02462 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC6.38□□□□□ -1.39
COL4A1P02462 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC6.38□□□□□ -1.39
COL4A1P02462 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC6.38□□□□□ -1.39
COL4A1P02462 AC105254.2-201ENST00000603636 436 ntBASIC6.38□□□□□ -1.39
COL4A1P02462 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL4A1P02462 AL356752.1-201ENST00000615844 593 ntBASIC6.38□□□□□ -1.39
COL4A1P02462 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC6.38□□□□□ -1.39
COL4A1P02462 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC6.38□□□□□ -1.39
COL4A1P02462 RTTN-222ENST00000640769 8088 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
COL4A1P02462 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL4A1P02462 RUNX1T1-205ENST00000436581 7454 ntTSL 5 BASIC6.38□□□□□ -1.39
COL4A1P02462 CHD8-201ENST00000399982 8229 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL4A1P02462 AL355834.1-201ENST00000556602 3965 ntBASIC6.37□□□□□ -1.39
COL4A1P02462 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL4A1P02462 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC6.37□□□□□ -1.39
COL4A1P02462 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL4A1P02462 MIR600-201ENST00000385007 98 ntBASIC6.37□□□□□ -1.39
COL4A1P02462 CYP2AC1P-201ENST00000407830 1173 ntBASIC6.37□□□□□ -1.39
COL4A1P02462 CHEK2P3-201ENST00000416118 248 ntBASIC6.37□□□□□ -1.39
COL4A1P02462 AC124944.2-201ENST00000429866 1242 ntBASIC6.37□□□□□ -1.39
COL4A1P02462 ELOCP3-201ENST00000439303 348 ntBASIC6.37□□□□□ -1.39
COL4A1P02462 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC6.37□□□□□ -1.39
COL4A1P02462 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC6.37□□□□□ -1.39
COL4A1P02462 MORF4L1P3-201ENST00000525966 950 ntBASIC6.37□□□□□ -1.39
COL4A1P02462 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC6.37□□□□□ -1.39
COL4A1P02462 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC6.37□□□□□ -1.39
COL4A1P02462 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC6.37□□□□□ -1.39
COL4A1P02462 AC011626.1-201ENST00000604710 562 ntBASIC6.37□□□□□ -1.39
COL4A1P02462 AP000346.3-201ENST00000622821 210 ntBASIC6.37□□□□□ -1.39
COL4A1P02462 HSPA8P14-201ENST00000552265 1805 ntBASIC6.37□□□□□ -1.39
COL4A1P02462 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL4A1P02462 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL4A1P02462 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC6.37□□□□□ -1.39
COL4A1P02462 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL4A1P02462 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC6.37□□□□□ -1.39
COL4A1P02462 HNRNPR-210ENST00000478691 7646 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL4A1P02462 SOX6-201ENST00000316399 8808 ntAPPRIS P3 TSL 5 BASIC6.37□□□□□ -1.39
COL4A1P02462 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC6.37□□□□□ -1.39
COL4A1P02462 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL4A1P02462 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC6.37□□□□□ -1.39
COL4A1P02462 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC6.36□□□□□ -1.39
COL4A1P02462 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC6.36□□□□□ -1.39
COL4A1P02462 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL4A1P02462 RN7SKP113-201ENST00000363891 295 ntBASIC6.36□□□□□ -1.39
COL4A1P02462 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC6.36□□□□□ -1.39
COL4A1P02462 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL4A1P02462 NDUFB4P8-201ENST00000435351 367 ntBASIC6.36□□□□□ -1.39
COL4A1P02462 MED28P3-201ENST00000444288 531 ntBASIC6.36□□□□□ -1.39
COL4A1P02462 HMGN2P25-201ENST00000486956 268 ntBASIC6.36□□□□□ -1.39
COL4A1P02462 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL4A1P02462 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC6.36□□□□□ -1.39
COL4A1P02462 AC097173.1-201ENST00000505862 819 ntBASIC6.36□□□□□ -1.39
COL4A1P02462 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC6.36□□□□□ -1.39
COL4A1P02462 AC234771.5-201ENST00000600161 514 ntBASIC6.36□□□□□ -1.39
COL4A1P02462 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC6.36□□□□□ -1.39
COL4A1P02462 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL4A1P02462 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL4A1P02462 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 86.4 ms