Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
CUX2O14529 ABLIM1-214ENST00000533213 7606 ntTSL 5 BASIC9.37□□□□□ -0.91
CUX2O14529 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
CUX2O14529 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC9.37□□□□□ -0.91
CUX2O14529 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC9.37□□□□□ -0.91
CUX2O14529 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC9.37□□□□□ -0.91
CUX2O14529 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC9.36□□□□□ -0.91
CUX2O14529 NLRP13-202ENST00000588751 3533 ntAPPRIS ALT2 TSL 5 BASIC9.36□□□□□ -0.91
CUX2O14529 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC9.36□□□□□ -0.91
CUX2O14529 AL589993.1-201ENST00000407450 2524 ntBASIC9.36□□□□□ -0.91
CUX2O14529 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC9.36□□□□□ -0.91
CUX2O14529 ATP2B4-204ENST00000367218 8918 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
CUX2O14529 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
CUX2O14529 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC9.36□□□□□ -0.91
CUX2O14529 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC9.36□□□□□ -0.91
CUX2O14529 DUTP1-201ENST00000493631 470 ntBASIC9.36□□□□□ -0.91
CUX2O14529 AC111000.3-201ENST00000508057 576 ntBASIC9.36□□□□□ -0.91
CUX2O14529 MTND6P2-201ENST00000512226 524 ntBASIC9.36□□□□□ -0.91
CUX2O14529 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC9.36□□□□□ -0.91
CUX2O14529 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC9.36□□□□□ -0.91
CUX2O14529 AC015726.1-202ENST00000602532 475 ntTSL 5 BASIC9.36□□□□□ -0.91
CUX2O14529 AC005962.2-201ENST00000611427 652 ntBASIC9.36□□□□□ -0.91
CUX2O14529 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
CUX2O14529 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC9.36□□□□□ -0.91
CUX2O14529 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC9.36□□□□□ -0.91
CUX2O14529 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
CUX2O14529 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC9.36□□□□□ -0.91
CUX2O14529 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
CUX2O14529 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC9.36□□□□□ -0.91
CUX2O14529 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC9.36□□□□□ -0.91
CUX2O14529 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
CUX2O14529 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC9.36□□□□□ -0.91
CUX2O14529 MFSD8-239ENST00000641590 2479 ntBASIC9.36□□□□□ -0.91
CUX2O14529 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
CUX2O14529 AC016831.1-201ENST00000432045 6411 ntTSL 2 BASIC9.35□□□□□ -0.91
CUX2O14529 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
CUX2O14529 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC9.35□□□□□ -0.91
CUX2O14529 TNRC6A-201ENST00000315183 8303 ntAPPRIS ALT2 TSL 5 BASIC9.35□□□□□ -0.91
CUX2O14529 CHEK2P3-201ENST00000416118 248 ntBASIC9.35□□□□□ -0.91
CUX2O14529 SNORA84-201ENST00000459229 133 ntBASIC9.35□□□□□ -0.91
CUX2O14529 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC9.35□□□□□ -0.91
CUX2O14529 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC9.35□□□□□ -0.91
CUX2O14529 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC9.35□□□□□ -0.91
CUX2O14529 MIR3667-201ENST00000581025 74 ntBASIC9.35□□□□□ -0.91
CUX2O14529 RN7SL690P-201ENST00000582087 240 ntBASIC9.35□□□□□ -0.91
CUX2O14529 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC9.35□□□□□ -0.91
CUX2O14529 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC9.35□□□□□ -0.91
CUX2O14529 NEK11-201ENST00000356918 1874 ntAPPRIS ALT2 TSL 5 BASIC9.35□□□□□ -0.91
CUX2O14529 AC068870.1-201ENST00000563737 2455 ntBASIC9.35□□□□□ -0.91
CUX2O14529 POMP-202ENST00000460403 1428 ntTSL 3 BASIC9.35□□□□□ -0.91
CUX2O14529 VANGL1-202ENST00000355485 8691 ntAPPRIS P3 TSL 1 (best) BASIC9.35□□□□□ -0.91
CUX2O14529 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
CUX2O14529 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
CUX2O14529 ATF7IP-222ENST00000544627 4847 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
CUX2O14529 CASR-205ENST00000639785 10047 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
CUX2O14529 ALS2-201ENST00000264276 6644 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
CUX2O14529 RIF1-201ENST00000243326 15003 ntAPPRIS P3 TSL 1 (best) BASIC9.35□□□□□ -0.91
CUX2O14529 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
CUX2O14529 AC006511.3-201ENST00000624929 1783 ntBASIC9.34□□□□□ -0.91
CUX2O14529 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC9.34□□□□□ -0.91
CUX2O14529 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC9.34□□□□□ -0.91
CUX2O14529 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC9.34□□□□□ -0.91
CUX2O14529 TMEM183AP1-205ENST00000432739 290 ntBASIC9.34□□□□□ -0.91
CUX2O14529 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC9.34□□□□□ -0.91
CUX2O14529 AC020593.1-201ENST00000507399 299 ntBASIC9.34□□□□□ -0.91
CUX2O14529 HMGB1P44-201ENST00000508597 572 ntBASIC9.34□□□□□ -0.91
CUX2O14529 AC133555.2-201ENST00000550213 292 ntBASIC9.34□□□□□ -0.91
CUX2O14529 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC9.34□□□□□ -0.91
CUX2O14529 VN1R85P-201ENST00000601587 426 ntBASIC9.34□□□□□ -0.91
CUX2O14529 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC9.34□□□□□ -0.91
CUX2O14529 AC067959.1-201ENST00000604334 379 ntBASIC9.34□□□□□ -0.91
CUX2O14529 AC011944.2-201ENST00000624440 683 ntBASIC9.34□□□□□ -0.91
CUX2O14529 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC9.34□□□□□ -0.91
CUX2O14529 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC9.34□□□□□ -0.91
CUX2O14529 MDM4-214ENST00000612738 9407 ntTSL 5 BASIC9.34□□□□□ -0.91
CUX2O14529 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC9.34□□□□□ -0.91
CUX2O14529 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC9.34□□□□□ -0.91
CUX2O14529 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
CUX2O14529 AC007996.1-201ENST00000620414 2821 ntBASIC9.34□□□□□ -0.91
CUX2O14529 DPY19L1P1-201ENST00000417811 2594 ntBASIC9.34□□□□□ -0.91
CUX2O14529 RBMXL1-201ENST00000321792 4799 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
CUX2O14529 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
CUX2O14529 SNORD8-201ENST00000363915 110 ntBASIC9.34□□□□□ -0.91
CUX2O14529 OR4K12P-201ENST00000406538 961 ntBASIC9.34□□□□□ -0.91
CUX2O14529 AL139039.2-201ENST00000407436 479 ntBASIC9.34□□□□□ -0.91
CUX2O14529 GJA6P-201ENST00000415117 1042 ntBASIC9.34□□□□□ -0.91
CUX2O14529 RPL12P17-201ENST00000432393 498 ntBASIC9.34□□□□□ -0.91
CUX2O14529 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC9.34□□□□□ -0.91
CUX2O14529 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC9.34□□□□□ -0.91
CUX2O14529 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC9.34□□□□□ -0.91
CUX2O14529 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC9.34□□□□□ -0.91
CUX2O14529 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC9.34□□□□□ -0.91
CUX2O14529 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
CUX2O14529 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
CUX2O14529 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC9.34□□□□□ -0.92
CUX2O14529 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC9.34□□□□□ -0.92
CUX2O14529 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC9.33□□□□□ -0.92
CUX2O14529 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC9.33□□□□□ -0.92
CUX2O14529 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC9.33□□□□□ -0.92
CUX2O14529 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms