Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHGA1Q9Y5H4 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHGA1Q9Y5H4 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHGA1Q9Y5H4 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHGA1Q9Y5H4 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHGA1Q9Y5H4 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC18.89■□□□□ 0.61
PCDHGA1Q9Y5H4 AC009947.2-201ENST00000444014 672 ntBASIC18.89■□□□□ 0.61
PCDHGA1Q9Y5H4 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
PCDHGA1Q9Y5H4 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.89■□□□□ 0.61
PCDHGA1Q9Y5H4 KRT18P56-201ENST00000507275 550 ntBASIC18.89■□□□□ 0.61
PCDHGA1Q9Y5H4 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC18.89■□□□□ 0.61
PCDHGA1Q9Y5H4 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHGA1Q9Y5H4 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
PCDHGA1Q9Y5H4 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC18.89■□□□□ 0.61
PCDHGA1Q9Y5H4 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC18.89■□□□□ 0.61
PCDHGA1Q9Y5H4 AL121956.5-201ENST00000625261 221 ntBASIC18.89■□□□□ 0.61
PCDHGA1Q9Y5H4 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC18.89■□□□□ 0.61
PCDHGA1Q9Y5H4 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHGA1Q9Y5H4 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
PCDHGA1Q9Y5H4 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC18.89■□□□□ 0.61
PCDHGA1Q9Y5H4 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHGA1Q9Y5H4 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHGA1Q9Y5H4 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHGA1Q9Y5H4 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA1Q9Y5H4 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
PCDHGA1Q9Y5H4 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
PCDHGA1Q9Y5H4 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC18.88■□□□□ 0.61
PCDHGA1Q9Y5H4 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA1Q9Y5H4 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA1Q9Y5H4 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA1Q9Y5H4 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA1Q9Y5H4 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA1Q9Y5H4 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
PCDHGA1Q9Y5H4 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.88■□□□□ 0.61
PCDHGA1Q9Y5H4 TOLLIP-AS1-201ENST00000530897 939 ntBASIC18.88■□□□□ 0.61
PCDHGA1Q9Y5H4 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.88■□□□□ 0.61
PCDHGA1Q9Y5H4 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
PCDHGA1Q9Y5H4 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA1Q9Y5H4 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA1Q9Y5H4 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA1Q9Y5H4 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA1Q9Y5H4 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA1Q9Y5H4 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA1Q9Y5H4 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA1Q9Y5H4 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.88■□□□□ 0.61
PCDHGA1Q9Y5H4 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA1Q9Y5H4 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.88■□□□□ 0.61
PCDHGA1Q9Y5H4 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA1Q9Y5H4 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA1Q9Y5H4 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHGA1Q9Y5H4 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
PCDHGA1Q9Y5H4 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHGA1Q9Y5H4 AC007663.1-201ENST00000438948 1240 ntBASIC18.87■□□□□ 0.61
PCDHGA1Q9Y5H4 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.87■□□□□ 0.61
PCDHGA1Q9Y5H4 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC18.87■□□□□ 0.61
PCDHGA1Q9Y5H4 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC18.87■□□□□ 0.61
PCDHGA1Q9Y5H4 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC18.87■□□□□ 0.61
PCDHGA1Q9Y5H4 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHGA1Q9Y5H4 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
PCDHGA1Q9Y5H4 BID-212ENST00000614949 1988 ntTSL 5 BASIC18.87■□□□□ 0.61
PCDHGA1Q9Y5H4 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC18.87■□□□□ 0.61
PCDHGA1Q9Y5H4 HLA-A-209ENST00000638375 975 ntBASIC18.87■□□□□ 0.61
PCDHGA1Q9Y5H4 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHGA1Q9Y5H4 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC18.87■□□□□ 0.61
PCDHGA1Q9Y5H4 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCDHGA1Q9Y5H4 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PCDHGA1Q9Y5H4 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCDHGA1Q9Y5H4 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PCDHGA1Q9Y5H4 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCDHGA1Q9Y5H4 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC18.86■□□□□ 0.61
PCDHGA1Q9Y5H4 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCDHGA1Q9Y5H4 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PCDHGA1Q9Y5H4 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC18.86■□□□□ 0.61
PCDHGA1Q9Y5H4 COPS8-203ENST00000409334 794 ntTSL 5 BASIC18.86■□□□□ 0.61
PCDHGA1Q9Y5H4 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC18.86■□□□□ 0.61
PCDHGA1Q9Y5H4 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
PCDHGA1Q9Y5H4 TSPY17P-201ENST00000450329 467 ntBASIC18.86■□□□□ 0.61
PCDHGA1Q9Y5H4 HOMER2P1-201ENST00000455653 964 ntBASIC18.86■□□□□ 0.61
PCDHGA1Q9Y5H4 AC008040.2-201ENST00000461049 708 ntBASIC18.86■□□□□ 0.61
PCDHGA1Q9Y5H4 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC18.86■□□□□ 0.61
PCDHGA1Q9Y5H4 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
PCDHGA1Q9Y5H4 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.86■□□□□ 0.61
PCDHGA1Q9Y5H4 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
PCDHGA1Q9Y5H4 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC18.86■□□□□ 0.61
PCDHGA1Q9Y5H4 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCDHGA1Q9Y5H4 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC18.86■□□□□ 0.61
PCDHGA1Q9Y5H4 AC141257.4-201ENST00000634557 245 ntBASIC18.86■□□□□ 0.61
PCDHGA1Q9Y5H4 AC136944.6-201ENST00000634818 245 ntBASIC18.86■□□□□ 0.61
PCDHGA1Q9Y5H4 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PCDHGA1Q9Y5H4 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PCDHGA1Q9Y5H4 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.86■□□□□ 0.61
PCDHGA1Q9Y5H4 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC18.85■□□□□ 0.61
PCDHGA1Q9Y5H4 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PCDHGA1Q9Y5H4 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PCDHGA1Q9Y5H4 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PCDHGA1Q9Y5H4 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.85■□□□□ 0.61
PCDHGA1Q9Y5H4 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.85■□□□□ 0.61
PCDHGA1Q9Y5H4 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC18.85■□□□□ 0.61
PCDHGA1Q9Y5H4 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
PCDHGA1Q9Y5H4 AC092338.2-201ENST00000568827 1415 ntBASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms