Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.2■□□□□ 0.66
PCDHB3Q9Y5E6 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
PCDHB3Q9Y5E6 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.2■□□□□ 0.66
PCDHB3Q9Y5E6 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
PCDHB3Q9Y5E6 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
PCDHB3Q9Y5E6 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC19.2■□□□□ 0.66
PCDHB3Q9Y5E6 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.2■□□□□ 0.66
PCDHB3Q9Y5E6 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC19.2■□□□□ 0.66
PCDHB3Q9Y5E6 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PCDHB3Q9Y5E6 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC19.2■□□□□ 0.66
PCDHB3Q9Y5E6 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PCDHB3Q9Y5E6 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
PCDHB3Q9Y5E6 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC19.2■□□□□ 0.66
PCDHB3Q9Y5E6 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.2■□□□□ 0.66
PCDHB3Q9Y5E6 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.2■□□□□ 0.66
PCDHB3Q9Y5E6 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
PCDHB3Q9Y5E6 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
PCDHB3Q9Y5E6 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PCDHB3Q9Y5E6 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
PCDHB3Q9Y5E6 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.2■□□□□ 0.66
PCDHB3Q9Y5E6 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDHB3Q9Y5E6 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDHB3Q9Y5E6 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.19■□□□□ 0.66
PCDHB3Q9Y5E6 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PCDHB3Q9Y5E6 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDHB3Q9Y5E6 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC19.19■□□□□ 0.66
PCDHB3Q9Y5E6 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PCDHB3Q9Y5E6 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PCDHB3Q9Y5E6 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC19.19■□□□□ 0.66
PCDHB3Q9Y5E6 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDHB3Q9Y5E6 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.19■□□□□ 0.66
PCDHB3Q9Y5E6 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
PCDHB3Q9Y5E6 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.19■□□□□ 0.66
PCDHB3Q9Y5E6 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDHB3Q9Y5E6 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDHB3Q9Y5E6 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDHB3Q9Y5E6 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PCDHB3Q9Y5E6 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC19.19■□□□□ 0.66
PCDHB3Q9Y5E6 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDHB3Q9Y5E6 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.19■□□□□ 0.66
PCDHB3Q9Y5E6 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDHB3Q9Y5E6 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHB3Q9Y5E6 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHB3Q9Y5E6 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.18■□□□□ 0.66
PCDHB3Q9Y5E6 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.18■□□□□ 0.66
PCDHB3Q9Y5E6 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
PCDHB3Q9Y5E6 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.18■□□□□ 0.66
PCDHB3Q9Y5E6 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHB3Q9Y5E6 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHB3Q9Y5E6 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHB3Q9Y5E6 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.18■□□□□ 0.66
PCDHB3Q9Y5E6 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.18■□□□□ 0.66
PCDHB3Q9Y5E6 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHB3Q9Y5E6 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHB3Q9Y5E6 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC19.18■□□□□ 0.66
PCDHB3Q9Y5E6 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
PCDHB3Q9Y5E6 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC19.18■□□□□ 0.66
PCDHB3Q9Y5E6 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHB3Q9Y5E6 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC19.18■□□□□ 0.66
PCDHB3Q9Y5E6 AC023632.3-201ENST00000521633 145 ntBASIC19.18■□□□□ 0.66
PCDHB3Q9Y5E6 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
PCDHB3Q9Y5E6 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC19.18■□□□□ 0.66
PCDHB3Q9Y5E6 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHB3Q9Y5E6 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.18■□□□□ 0.66
PCDHB3Q9Y5E6 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHB3Q9Y5E6 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHB3Q9Y5E6 AL158211.5-201ENST00000623583 2518 ntBASIC19.18■□□□□ 0.66
PCDHB3Q9Y5E6 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHB3Q9Y5E6 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
PCDHB3Q9Y5E6 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
PCDHB3Q9Y5E6 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHB3Q9Y5E6 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHB3Q9Y5E6 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHB3Q9Y5E6 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
PCDHB3Q9Y5E6 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHB3Q9Y5E6 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHB3Q9Y5E6 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHB3Q9Y5E6 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
PCDHB3Q9Y5E6 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHB3Q9Y5E6 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHB3Q9Y5E6 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC19.17■□□□□ 0.66
PCDHB3Q9Y5E6 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC19.17■□□□□ 0.66
PCDHB3Q9Y5E6 AC006557.6-201ENST00000623071 864 ntBASIC19.17■□□□□ 0.66
PCDHB3Q9Y5E6 AC073912.3-201ENST00000624414 853 ntBASIC19.17■□□□□ 0.66
PCDHB3Q9Y5E6 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHB3Q9Y5E6 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHB3Q9Y5E6 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
PCDHB3Q9Y5E6 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC19.17■□□□□ 0.66
PCDHB3Q9Y5E6 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHB3Q9Y5E6 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.17■□□□□ 0.66
PCDHB3Q9Y5E6 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHB3Q9Y5E6 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHB3Q9Y5E6 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
PCDHB3Q9Y5E6 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHB3Q9Y5E6 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHB3Q9Y5E6 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHB3Q9Y5E6 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHB3Q9Y5E6 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.16■□□□□ 0.66
PCDHB3Q9Y5E6 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.16■□□□□ 0.66
PCDHB3Q9Y5E6 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms