Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC37.38■■■■□ 3.57
SHROOM4Q9ULL8 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC37.38■■■■□ 3.57
SHROOM4Q9ULL8 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC37.38■■■■□ 3.57
SHROOM4Q9ULL8 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC37.38■■■■□ 3.57
SHROOM4Q9ULL8 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC37.38■■■■□ 3.57
SHROOM4Q9ULL8 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC37.38■■■■□ 3.57
SHROOM4Q9ULL8 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC37.38■■■■□ 3.57
SHROOM4Q9ULL8 INGX-201ENST00000359239 846 ntBASIC37.38■■■■□ 3.57
SHROOM4Q9ULL8 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC37.38■■■■□ 3.57
SHROOM4Q9ULL8 HCG4P8-203ENST00000443049 980 ntBASIC37.38■■■■□ 3.57
SHROOM4Q9ULL8 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC37.38■■■■□ 3.57
SHROOM4Q9ULL8 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC37.38■■■■□ 3.57
SHROOM4Q9ULL8 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC37.38■■■■□ 3.57
SHROOM4Q9ULL8 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC37.37■■■■□ 3.57
SHROOM4Q9ULL8 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC37.37■■■■□ 3.57
SHROOM4Q9ULL8 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC37.37■■■■□ 3.57
SHROOM4Q9ULL8 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC37.37■■■■□ 3.57
SHROOM4Q9ULL8 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC37.37■■■■□ 3.57
SHROOM4Q9ULL8 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC37.37■■■■□ 3.57
SHROOM4Q9ULL8 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC37.37■■■■□ 3.57
SHROOM4Q9ULL8 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC37.37■■■■□ 3.57
SHROOM4Q9ULL8 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC37.37■■■■□ 3.57
SHROOM4Q9ULL8 PP7080-204ENST00000510714 601 ntTSL 3 BASIC37.37■■■■□ 3.57
SHROOM4Q9ULL8 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC37.37■■■■□ 3.57
SHROOM4Q9ULL8 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC37.37■■■■□ 3.57
SHROOM4Q9ULL8 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC37.37■■■■□ 3.57
SHROOM4Q9ULL8 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC37.37■■■■□ 3.57
SHROOM4Q9ULL8 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC37.37■■■■□ 3.57
SHROOM4Q9ULL8 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC37.36■■■■□ 3.57
SHROOM4Q9ULL8 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC37.36■■■■□ 3.57
SHROOM4Q9ULL8 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC37.36■■■■□ 3.57
SHROOM4Q9ULL8 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC37.36■■■■□ 3.57
SHROOM4Q9ULL8 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC37.36■■■■□ 3.57
SHROOM4Q9ULL8 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC37.36■■■■□ 3.57
SHROOM4Q9ULL8 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC37.36■■■■□ 3.57
SHROOM4Q9ULL8 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC37.36■■■■□ 3.57
SHROOM4Q9ULL8 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC37.36■■■■□ 3.57
SHROOM4Q9ULL8 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC37.36■■■■□ 3.57
SHROOM4Q9ULL8 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC37.35■■■■□ 3.57
SHROOM4Q9ULL8 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC37.35■■■■□ 3.57
SHROOM4Q9ULL8 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC37.35■■■■□ 3.57
SHROOM4Q9ULL8 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC37.35■■■■□ 3.57
SHROOM4Q9ULL8 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC37.35■■■■□ 3.57
SHROOM4Q9ULL8 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC37.35■■■■□ 3.57
SHROOM4Q9ULL8 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC37.35■■■■□ 3.57
SHROOM4Q9ULL8 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC37.35■■■■□ 3.57
SHROOM4Q9ULL8 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC37.34■■■■□ 3.57
SHROOM4Q9ULL8 AC139887.4-201ENST00000607877 719 ntBASIC37.34■■■■□ 3.57
SHROOM4Q9ULL8 AC008622.2-201ENST00000617006 1229 ntBASIC37.34■■■■□ 3.57
SHROOM4Q9ULL8 AL691432.3-201ENST00000621860 400 ntBASIC37.34■■■■□ 3.57
SHROOM4Q9ULL8 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC37.34■■■■□ 3.57
SHROOM4Q9ULL8 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC37.34■■■■□ 3.57
SHROOM4Q9ULL8 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC37.34■■■■□ 3.57
SHROOM4Q9ULL8 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC37.34■■■■□ 3.57
SHROOM4Q9ULL8 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC37.34■■■■□ 3.57
SHROOM4Q9ULL8 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC37.34■■■■□ 3.57
SHROOM4Q9ULL8 ME2-216ENST00000639850 2331 ntTSL 5 BASIC37.33■■■■□ 3.57
SHROOM4Q9ULL8 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC37.33■■■■□ 3.57
SHROOM4Q9ULL8 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC37.33■■■■□ 3.57
SHROOM4Q9ULL8 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC37.33■■■■□ 3.57
SHROOM4Q9ULL8 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC37.33■■■■□ 3.57
SHROOM4Q9ULL8 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC37.33■■■■□ 3.57
SHROOM4Q9ULL8 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC37.33■■■■□ 3.57
SHROOM4Q9ULL8 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC37.33■■■■□ 3.57
SHROOM4Q9ULL8 AC096733.2-201ENST00000609937 1394 ntBASIC37.33■■■■□ 3.57
SHROOM4Q9ULL8 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC37.33■■■■□ 3.57
SHROOM4Q9ULL8 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC37.33■■■■□ 3.57
SHROOM4Q9ULL8 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC37.33■■■■□ 3.57
SHROOM4Q9ULL8 CD320-202ENST00000537716 1119 ntTSL 2 BASIC37.33■■■■□ 3.57
SHROOM4Q9ULL8 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC37.33■■■■□ 3.57
SHROOM4Q9ULL8 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC37.33■■■■□ 3.57
SHROOM4Q9ULL8 AC069148.1-201ENST00000608741 768 ntBASIC37.33■■■■□ 3.57
SHROOM4Q9ULL8 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC37.33■■■■□ 3.57
SHROOM4Q9ULL8 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC37.32■■■■□ 3.57
SHROOM4Q9ULL8 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC37.32■■■■□ 3.57
SHROOM4Q9ULL8 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC37.32■■■■□ 3.57
SHROOM4Q9ULL8 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC37.32■■■■□ 3.56
SHROOM4Q9ULL8 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC37.32■■■■□ 3.56
SHROOM4Q9ULL8 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC37.32■■■■□ 3.56
SHROOM4Q9ULL8 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC37.32■■■■□ 3.56
SHROOM4Q9ULL8 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC37.32■■■■□ 3.56
SHROOM4Q9ULL8 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC37.32■■■■□ 3.56
SHROOM4Q9ULL8 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC37.32■■■■□ 3.56
SHROOM4Q9ULL8 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC37.32■■■■□ 3.56
SHROOM4Q9ULL8 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC37.32■■■■□ 3.56
SHROOM4Q9ULL8 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC37.31■■■■□ 3.56
SHROOM4Q9ULL8 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC37.31■■■■□ 3.56
SHROOM4Q9ULL8 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC37.31■■■■□ 3.56
SHROOM4Q9ULL8 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC37.31■■■■□ 3.56
SHROOM4Q9ULL8 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC37.31■■■■□ 3.56
SHROOM4Q9ULL8 AC004980.1-204ENST00000429707 299 ntBASIC37.31■■■■□ 3.56
SHROOM4Q9ULL8 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC37.31■■■■□ 3.56
SHROOM4Q9ULL8 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC37.31■■■■□ 3.56
SHROOM4Q9ULL8 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC37.31■■■■□ 3.56
SHROOM4Q9ULL8 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC37.31■■■■□ 3.56
SHROOM4Q9ULL8 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC37.3■■■■□ 3.56
SHROOM4Q9ULL8 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC37.3■■■■□ 3.56
SHROOM4Q9ULL8 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC37.3■■■■□ 3.56
SHROOM4Q9ULL8 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC37.3■■■■□ 3.56
SHROOM4Q9ULL8 TSPY5P-201ENST00000426936 936 ntBASIC37.3■■■■□ 3.56
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms