Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.83■□□□□ 0.77
LHX3Q9UBR4 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.83■□□□□ 0.77
LHX3Q9UBR4 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
LHX3Q9UBR4 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LHX3Q9UBR4 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC19.83■□□□□ 0.77
LHX3Q9UBR4 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LHX3Q9UBR4 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LHX3Q9UBR4 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.83■□□□□ 0.77
LHX3Q9UBR4 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
LHX3Q9UBR4 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
LHX3Q9UBR4 RPS2P55-201ENST00000397318 883 ntBASIC19.83■□□□□ 0.77
LHX3Q9UBR4 AC012618.2-201ENST00000428058 849 ntBASIC19.83■□□□□ 0.77
LHX3Q9UBR4 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.83■□□□□ 0.77
LHX3Q9UBR4 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
LHX3Q9UBR4 AC107956.1-201ENST00000494359 873 ntBASIC19.83■□□□□ 0.77
LHX3Q9UBR4 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.83■□□□□ 0.77
LHX3Q9UBR4 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC19.83■□□□□ 0.77
LHX3Q9UBR4 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
LHX3Q9UBR4 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.83■□□□□ 0.76
LHX3Q9UBR4 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
LHX3Q9UBR4 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC19.83■□□□□ 0.76
LHX3Q9UBR4 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
LHX3Q9UBR4 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
LHX3Q9UBR4 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
LHX3Q9UBR4 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
LHX3Q9UBR4 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.82■□□□□ 0.76
LHX3Q9UBR4 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
LHX3Q9UBR4 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
LHX3Q9UBR4 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LHX3Q9UBR4 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
LHX3Q9UBR4 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LHX3Q9UBR4 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LHX3Q9UBR4 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
LHX3Q9UBR4 FDX2-207ENST00000494368 584 ntTSL 4 BASIC19.82■□□□□ 0.76
LHX3Q9UBR4 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC19.82■□□□□ 0.76
LHX3Q9UBR4 AC233702.5-201ENST00000584107 538 ntBASIC19.82■□□□□ 0.76
LHX3Q9UBR4 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC19.82■□□□□ 0.76
LHX3Q9UBR4 KRT8P8-201ENST00000434750 1448 ntBASIC19.82■□□□□ 0.76
LHX3Q9UBR4 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LHX3Q9UBR4 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
LHX3Q9UBR4 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LHX3Q9UBR4 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.81■□□□□ 0.76
LHX3Q9UBR4 AC125437.2-201ENST00000625180 2167 ntBASIC19.81■□□□□ 0.76
LHX3Q9UBR4 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
LHX3Q9UBR4 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.81■□□□□ 0.76
LHX3Q9UBR4 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LHX3Q9UBR4 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.81■□□□□ 0.76
LHX3Q9UBR4 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.81■□□□□ 0.76
LHX3Q9UBR4 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LHX3Q9UBR4 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LHX3Q9UBR4 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
LHX3Q9UBR4 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.81■□□□□ 0.76
LHX3Q9UBR4 RPS2P4-201ENST00000476944 856 ntBASIC19.81■□□□□ 0.76
LHX3Q9UBR4 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC19.81■□□□□ 0.76
LHX3Q9UBR4 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC19.81■□□□□ 0.76
LHX3Q9UBR4 AF186192.3-201ENST00000583427 947 ntBASIC19.81■□□□□ 0.76
LHX3Q9UBR4 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC19.81■□□□□ 0.76
LHX3Q9UBR4 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LHX3Q9UBR4 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
LHX3Q9UBR4 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
LHX3Q9UBR4 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.8■□□□□ 0.76
LHX3Q9UBR4 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LHX3Q9UBR4 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
LHX3Q9UBR4 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LHX3Q9UBR4 AL135905.2-201ENST00000584934 1404 ntBASIC19.8■□□□□ 0.76
LHX3Q9UBR4 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LHX3Q9UBR4 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LHX3Q9UBR4 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LHX3Q9UBR4 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
LHX3Q9UBR4 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.8■□□□□ 0.76
LHX3Q9UBR4 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC19.8■□□□□ 0.76
LHX3Q9UBR4 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC19.8■□□□□ 0.76
LHX3Q9UBR4 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
LHX3Q9UBR4 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC19.8■□□□□ 0.76
LHX3Q9UBR4 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LHX3Q9UBR4 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
LHX3Q9UBR4 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.8■□□□□ 0.76
LHX3Q9UBR4 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LHX3Q9UBR4 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.79■□□□□ 0.76
LHX3Q9UBR4 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LHX3Q9UBR4 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
LHX3Q9UBR4 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19.79■□□□□ 0.76
LHX3Q9UBR4 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LHX3Q9UBR4 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LHX3Q9UBR4 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC19.79■□□□□ 0.76
LHX3Q9UBR4 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
LHX3Q9UBR4 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.79■□□□□ 0.76
LHX3Q9UBR4 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.79■□□□□ 0.76
LHX3Q9UBR4 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LHX3Q9UBR4 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LHX3Q9UBR4 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC19.79■□□□□ 0.76
LHX3Q9UBR4 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.79■□□□□ 0.76
LHX3Q9UBR4 AL353708.3-201ENST00000610272 989 ntBASIC19.79■□□□□ 0.76
LHX3Q9UBR4 AC113410.3-201ENST00000623366 203 ntBASIC19.79■□□□□ 0.76
LHX3Q9UBR4 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LHX3Q9UBR4 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
LHX3Q9UBR4 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.79■□□□□ 0.76
LHX3Q9UBR4 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LHX3Q9UBR4 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LHX3Q9UBR4 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms