Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
TDP1Q9NUW8 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TDP1Q9NUW8 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TDP1Q9NUW8 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.25■□□□□ 0.83
TDP1Q9NUW8 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC20.25■□□□□ 0.83
TDP1Q9NUW8 AL049597.2-201ENST00000565575 961 ntBASIC20.25■□□□□ 0.83
TDP1Q9NUW8 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
TDP1Q9NUW8 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.25■□□□□ 0.83
TDP1Q9NUW8 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TDP1Q9NUW8 KRT8P8-201ENST00000434750 1448 ntBASIC20.25■□□□□ 0.83
TDP1Q9NUW8 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
TDP1Q9NUW8 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.24■□□□□ 0.83
TDP1Q9NUW8 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TDP1Q9NUW8 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TDP1Q9NUW8 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TDP1Q9NUW8 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TDP1Q9NUW8 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
TDP1Q9NUW8 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TDP1Q9NUW8 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.24■□□□□ 0.83
TDP1Q9NUW8 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
TDP1Q9NUW8 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC20.24■□□□□ 0.83
TDP1Q9NUW8 KRT18P57-201ENST00000443599 1254 ntBASIC20.24■□□□□ 0.83
TDP1Q9NUW8 EGLN1P1-201ENST00000531623 762 ntBASIC20.24■□□□□ 0.83
TDP1Q9NUW8 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TDP1Q9NUW8 AL445228.2-201ENST00000605589 952 ntBASIC20.24■□□□□ 0.83
TDP1Q9NUW8 AP000692.2-201ENST00000608391 879 ntBASIC20.24■□□□□ 0.83
TDP1Q9NUW8 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TDP1Q9NUW8 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TDP1Q9NUW8 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC20.24■□□□□ 0.83
TDP1Q9NUW8 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TDP1Q9NUW8 MOK-225ENST00000522867 1883 ntTSL 5 BASIC20.24■□□□□ 0.83
TDP1Q9NUW8 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TDP1Q9NUW8 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TDP1Q9NUW8 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TDP1Q9NUW8 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.24■□□□□ 0.83
TDP1Q9NUW8 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TDP1Q9NUW8 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TDP1Q9NUW8 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TDP1Q9NUW8 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC20.23■□□□□ 0.83
TDP1Q9NUW8 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TDP1Q9NUW8 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TDP1Q9NUW8 TSPY14P-201ENST00000303979 915 ntBASIC20.23■□□□□ 0.83
TDP1Q9NUW8 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
TDP1Q9NUW8 AC004951.3-201ENST00000418645 1148 ntBASIC20.23■□□□□ 0.83
TDP1Q9NUW8 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.23■□□□□ 0.83
TDP1Q9NUW8 PTPA-216ENST00000432651 857 ntTSL 2 BASIC20.23■□□□□ 0.83
TDP1Q9NUW8 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
TDP1Q9NUW8 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
TDP1Q9NUW8 SLC25A1P4-201ENST00000567977 778 ntBASIC20.23■□□□□ 0.83
TDP1Q9NUW8 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC20.23■□□□□ 0.83
TDP1Q9NUW8 AC011298.2-201ENST00000617989 482 ntBASIC20.23■□□□□ 0.83
TDP1Q9NUW8 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TDP1Q9NUW8 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TDP1Q9NUW8 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TDP1Q9NUW8 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TDP1Q9NUW8 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TDP1Q9NUW8 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TDP1Q9NUW8 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC20.23■□□□□ 0.83
TDP1Q9NUW8 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TDP1Q9NUW8 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TDP1Q9NUW8 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TDP1Q9NUW8 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.22■□□□□ 0.83
TDP1Q9NUW8 AC073508.3-201ENST00000619697 1419 ntBASIC20.22■□□□□ 0.83
TDP1Q9NUW8 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TDP1Q9NUW8 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TDP1Q9NUW8 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
TDP1Q9NUW8 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC20.22■□□□□ 0.83
TDP1Q9NUW8 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC20.22■□□□□ 0.83
TDP1Q9NUW8 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC20.22■□□□□ 0.83
TDP1Q9NUW8 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC20.22■□□□□ 0.83
TDP1Q9NUW8 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.22■□□□□ 0.83
TDP1Q9NUW8 AL590326.2-201ENST00000625139 305 ntBASIC20.22■□□□□ 0.83
TDP1Q9NUW8 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC20.22■□□□□ 0.83
TDP1Q9NUW8 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TDP1Q9NUW8 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TDP1Q9NUW8 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
TDP1Q9NUW8 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.22■□□□□ 0.83
TDP1Q9NUW8 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TDP1Q9NUW8 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.22■□□□□ 0.83
TDP1Q9NUW8 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
TDP1Q9NUW8 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TDP1Q9NUW8 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TDP1Q9NUW8 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.21■□□□□ 0.83
TDP1Q9NUW8 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.21■□□□□ 0.83
TDP1Q9NUW8 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TDP1Q9NUW8 GOLGA2P11-201ENST00000562660 1621 ntBASIC20.21■□□□□ 0.83
TDP1Q9NUW8 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC20.21■□□□□ 0.83
TDP1Q9NUW8 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TDP1Q9NUW8 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.21■□□□□ 0.83
TDP1Q9NUW8 KRT18P35-201ENST00000510488 1269 ntBASIC20.21■□□□□ 0.83
TDP1Q9NUW8 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
TDP1Q9NUW8 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TDP1Q9NUW8 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
TDP1Q9NUW8 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TDP1Q9NUW8 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
TDP1Q9NUW8 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TDP1Q9NUW8 AC073314.1-201ENST00000568729 2216 ntBASIC20.21■□□□□ 0.83
TDP1Q9NUW8 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TDP1Q9NUW8 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
TDP1Q9NUW8 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms