Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS35Q96QK1 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VPS35Q96QK1 F2R-202ENST00000505600 442 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS35Q96QK1 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS35Q96QK1 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
VPS35Q96QK1 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS35Q96QK1 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
VPS35Q96QK1 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.5■□□□□ 0.71
VPS35Q96QK1 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS35Q96QK1 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.49■□□□□ 0.71
VPS35Q96QK1 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
VPS35Q96QK1 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.49■□□□□ 0.71
VPS35Q96QK1 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VPS35Q96QK1 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.49■□□□□ 0.71
VPS35Q96QK1 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VPS35Q96QK1 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.49■□□□□ 0.71
VPS35Q96QK1 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.49■□□□□ 0.71
VPS35Q96QK1 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VPS35Q96QK1 AC112907.3-201ENST00000577781 2400 ntBASIC19.49■□□□□ 0.71
VPS35Q96QK1 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS35Q96QK1 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VPS35Q96QK1 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
VPS35Q96QK1 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC19.49■□□□□ 0.71
VPS35Q96QK1 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC19.49■□□□□ 0.71
VPS35Q96QK1 FAM197Y4-202ENST00000622692 608 ntBASIC19.49■□□□□ 0.71
VPS35Q96QK1 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VPS35Q96QK1 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS35Q96QK1 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS35Q96QK1 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.49■□□□□ 0.71
VPS35Q96QK1 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VPS35Q96QK1 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
VPS35Q96QK1 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC19.49■□□□□ 0.71
VPS35Q96QK1 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
VPS35Q96QK1 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS35Q96QK1 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS35Q96QK1 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VPS35Q96QK1 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.49■□□□□ 0.71
VPS35Q96QK1 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
VPS35Q96QK1 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS35Q96QK1 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS35Q96QK1 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS35Q96QK1 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
VPS35Q96QK1 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.48■□□□□ 0.71
VPS35Q96QK1 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.48■□□□□ 0.71
VPS35Q96QK1 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VPS35Q96QK1 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VPS35Q96QK1 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC19.48■□□□□ 0.71
VPS35Q96QK1 AL158047.1-201ENST00000445918 881 ntBASIC19.48■□□□□ 0.71
VPS35Q96QK1 UBE2SP1-201ENST00000450587 669 ntBASIC19.48■□□□□ 0.71
VPS35Q96QK1 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
VPS35Q96QK1 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
VPS35Q96QK1 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC19.48■□□□□ 0.71
VPS35Q96QK1 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC19.48■□□□□ 0.71
VPS35Q96QK1 AC004264.1-201ENST00000608354 794 ntBASIC19.48■□□□□ 0.71
VPS35Q96QK1 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC19.48■□□□□ 0.71
VPS35Q96QK1 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS35Q96QK1 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.48■□□□□ 0.71
VPS35Q96QK1 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS35Q96QK1 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.48■□□□□ 0.71
VPS35Q96QK1 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VPS35Q96QK1 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
VPS35Q96QK1 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS35Q96QK1 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.48■□□□□ 0.71
VPS35Q96QK1 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS35Q96QK1 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VPS35Q96QK1 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
VPS35Q96QK1 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS35Q96QK1 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
VPS35Q96QK1 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS35Q96QK1 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS35Q96QK1 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC19.47■□□□□ 0.71
VPS35Q96QK1 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VPS35Q96QK1 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
VPS35Q96QK1 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC19.47■□□□□ 0.71
VPS35Q96QK1 KRT16P5-201ENST00000455284 522 ntBASIC19.47■□□□□ 0.71
VPS35Q96QK1 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC19.47■□□□□ 0.71
VPS35Q96QK1 RHOD-202ENST00000532559 538 ntTSL 3 BASIC19.47■□□□□ 0.71
VPS35Q96QK1 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC19.47■□□□□ 0.71
VPS35Q96QK1 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC19.47■□□□□ 0.71
VPS35Q96QK1 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS35Q96QK1 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS35Q96QK1 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS35Q96QK1 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
VPS35Q96QK1 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VPS35Q96QK1 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS35Q96QK1 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC19.47■□□□□ 0.71
VPS35Q96QK1 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.47■□□□□ 0.71
VPS35Q96QK1 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.47■□□□□ 0.71
VPS35Q96QK1 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS35Q96QK1 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS35Q96QK1 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC19.46■□□□□ 0.71
VPS35Q96QK1 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS35Q96QK1 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS35Q96QK1 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS35Q96QK1 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
VPS35Q96QK1 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS35Q96QK1 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
VPS35Q96QK1 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS35Q96QK1 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS35Q96QK1 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms