Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SHROOM3Q8TF72 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
SHROOM3Q8TF72 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHROOM3Q8TF72 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHROOM3Q8TF72 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHROOM3Q8TF72 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC20.04■□□□□ 0.8
SHROOM3Q8TF72 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
SHROOM3Q8TF72 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.04■□□□□ 0.8
SHROOM3Q8TF72 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHROOM3Q8TF72 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC20.04■□□□□ 0.8
SHROOM3Q8TF72 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC20.04■□□□□ 0.8
SHROOM3Q8TF72 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHROOM3Q8TF72 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHROOM3Q8TF72 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SHROOM3Q8TF72 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
SHROOM3Q8TF72 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC20.04■□□□□ 0.8
SHROOM3Q8TF72 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
SHROOM3Q8TF72 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC20.04■□□□□ 0.8
SHROOM3Q8TF72 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHROOM3Q8TF72 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHROOM3Q8TF72 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHROOM3Q8TF72 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHROOM3Q8TF72 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.04■□□□□ 0.8
SHROOM3Q8TF72 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.03■□□□□ 0.8
SHROOM3Q8TF72 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHROOM3Q8TF72 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.03■□□□□ 0.8
SHROOM3Q8TF72 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SHROOM3Q8TF72 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
SHROOM3Q8TF72 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SHROOM3Q8TF72 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHROOM3Q8TF72 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SHROOM3Q8TF72 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SHROOM3Q8TF72 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.03■□□□□ 0.8
SHROOM3Q8TF72 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHROOM3Q8TF72 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC20.03■□□□□ 0.8
SHROOM3Q8TF72 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHROOM3Q8TF72 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SHROOM3Q8TF72 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
SHROOM3Q8TF72 TP73-202ENST00000354437 2140 ntTSL 5 BASIC20.03■□□□□ 0.8
SHROOM3Q8TF72 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHROOM3Q8TF72 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.03■□□□□ 0.8
SHROOM3Q8TF72 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHROOM3Q8TF72 KRT8P8-201ENST00000434750 1448 ntBASIC20.03■□□□□ 0.8
SHROOM3Q8TF72 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHROOM3Q8TF72 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SHROOM3Q8TF72 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHROOM3Q8TF72 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SHROOM3Q8TF72 MIR4497-201ENST00000583208 89 ntBASIC20.03■□□□□ 0.8
SHROOM3Q8TF72 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SHROOM3Q8TF72 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SHROOM3Q8TF72 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC20.02■□□□□ 0.8
SHROOM3Q8TF72 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC20.02■□□□□ 0.8
SHROOM3Q8TF72 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC20.02■□□□□ 0.8
SHROOM3Q8TF72 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SHROOM3Q8TF72 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
SHROOM3Q8TF72 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SHROOM3Q8TF72 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHROOM3Q8TF72 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
SHROOM3Q8TF72 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHROOM3Q8TF72 UBE2SP1-201ENST00000450587 669 ntBASIC20.02■□□□□ 0.8
SHROOM3Q8TF72 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC20.02■□□□□ 0.8
SHROOM3Q8TF72 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC20.02■□□□□ 0.8
SHROOM3Q8TF72 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHROOM3Q8TF72 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHROOM3Q8TF72 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHROOM3Q8TF72 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
SHROOM3Q8TF72 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SHROOM3Q8TF72 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.79
SHROOM3Q8TF72 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC20.02■□□□□ 0.79
SHROOM3Q8TF72 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SHROOM3Q8TF72 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
SHROOM3Q8TF72 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHROOM3Q8TF72 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHROOM3Q8TF72 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SHROOM3Q8TF72 TREX1-205ENST00000625293 1783 ntBASIC20.01■□□□□ 0.79
SHROOM3Q8TF72 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC20.01■□□□□ 0.79
SHROOM3Q8TF72 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHROOM3Q8TF72 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHROOM3Q8TF72 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
SHROOM3Q8TF72 AC239809.2-201ENST00000415381 517 ntBASIC20.01■□□□□ 0.79
SHROOM3Q8TF72 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.01■□□□□ 0.79
SHROOM3Q8TF72 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC20.01■□□□□ 0.79
SHROOM3Q8TF72 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC20.01■□□□□ 0.79
SHROOM3Q8TF72 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC20.01■□□□□ 0.79
SHROOM3Q8TF72 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.01■□□□□ 0.79
SHROOM3Q8TF72 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SHROOM3Q8TF72 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.01■□□□□ 0.79
SHROOM3Q8TF72 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHROOM3Q8TF72 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHROOM3Q8TF72 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHROOM3Q8TF72 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHROOM3Q8TF72 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
SHROOM3Q8TF72 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHROOM3Q8TF72 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHROOM3Q8TF72 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC20.01■□□□□ 0.79
SHROOM3Q8TF72 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.01■□□□□ 0.79
SHROOM3Q8TF72 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHROOM3Q8TF72 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC20.01■□□□□ 0.79
SHROOM3Q8TF72 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHROOM3Q8TF72 KRASP1-201ENST00000407852 552 ntBASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms