Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CLHC1Q8NHS4 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 BX276092.2-201ENST00000417668 665 ntBASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 PARL-206ENST00000435888 1098 ntTSL 5 BASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 AF201337.1-201ENST00000520239 748 ntBASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
CLHC1Q8NHS4 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLHC1Q8NHS4 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.81■□□□□ 0.6
CLHC1Q8NHS4 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLHC1Q8NHS4 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLHC1Q8NHS4 GPX1P1-201ENST00000388829 606 ntBASIC18.81■□□□□ 0.6
CLHC1Q8NHS4 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLHC1Q8NHS4 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC18.81■□□□□ 0.6
CLHC1Q8NHS4 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLHC1Q8NHS4 Z82202.1-201ENST00000623446 1880 ntBASIC18.81■□□□□ 0.6
CLHC1Q8NHS4 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.81■□□□□ 0.6
CLHC1Q8NHS4 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CLHC1Q8NHS4 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLHC1Q8NHS4 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CLHC1Q8NHS4 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLHC1Q8NHS4 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CLHC1Q8NHS4 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CLHC1Q8NHS4 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLHC1Q8NHS4 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
CLHC1Q8NHS4 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
CLHC1Q8NHS4 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CLHC1Q8NHS4 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.8■□□□□ 0.6
CLHC1Q8NHS4 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.8■□□□□ 0.6
CLHC1Q8NHS4 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLHC1Q8NHS4 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLHC1Q8NHS4 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC18.8■□□□□ 0.6
CLHC1Q8NHS4 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC18.8■□□□□ 0.6
CLHC1Q8NHS4 AL137784.2-201ENST00000607332 1000 ntBASIC18.8■□□□□ 0.6
CLHC1Q8NHS4 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLHC1Q8NHS4 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLHC1Q8NHS4 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLHC1Q8NHS4 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CLHC1Q8NHS4 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLHC1Q8NHS4 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CLHC1Q8NHS4 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLHC1Q8NHS4 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLHC1Q8NHS4 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.8■□□□□ 0.6
CLHC1Q8NHS4 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLHC1Q8NHS4 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLHC1Q8NHS4 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CLHC1Q8NHS4 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
CLHC1Q8NHS4 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 MIR935-201ENST00000401179 91 ntBASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 GLI3-203ENST00000437480 451 ntTSL 2 BASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 AC026185.1-201ENST00000445748 174 ntBASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 DLX3-202ENST00000512495 834 ntTSL 2 BASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 MARS-234ENST00000630571 216 ntTSL 5 BASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 MARS-235ENST00000630803 183 ntTSL 3 BASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.79■□□□□ 0.6
CLHC1Q8NHS4 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms