Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC13.27□□□□□ -0.29
VPS13DQ5THJ4 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
VPS13DQ5THJ4 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
VPS13DQ5THJ4 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
VPS13DQ5THJ4 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC13.27□□□□□ -0.29
VPS13DQ5THJ4 CCR12P-201ENST00000446203 998 ntBASIC13.27□□□□□ -0.29
VPS13DQ5THJ4 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC13.27□□□□□ -0.29
VPS13DQ5THJ4 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
VPS13DQ5THJ4 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC13.27□□□□□ -0.29
VPS13DQ5THJ4 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
VPS13DQ5THJ4 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
VPS13DQ5THJ4 TMEM179-206ENST00000616017 1645 ntBASIC13.26□□□□□ -0.29
VPS13DQ5THJ4 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
VPS13DQ5THJ4 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
VPS13DQ5THJ4 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
VPS13DQ5THJ4 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC13.26□□□□□ -0.29
VPS13DQ5THJ4 AL671277.2-201ENST00000458060 996 ntBASIC13.26□□□□□ -0.29
VPS13DQ5THJ4 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC13.26□□□□□ -0.29
VPS13DQ5THJ4 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
VPS13DQ5THJ4 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC13.26□□□□□ -0.29
VPS13DQ5THJ4 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
VPS13DQ5THJ4 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
VPS13DQ5THJ4 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
VPS13DQ5THJ4 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC13.26□□□□□ -0.29
VPS13DQ5THJ4 TSPY17P-201ENST00000450329 467 ntBASIC13.26□□□□□ -0.29
VPS13DQ5THJ4 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC13.26□□□□□ -0.29
VPS13DQ5THJ4 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC13.26□□□□□ -0.29
VPS13DQ5THJ4 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
VPS13DQ5THJ4 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC13.26□□□□□ -0.29
VPS13DQ5THJ4 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC13.26□□□□□ -0.29
VPS13DQ5THJ4 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
VPS13DQ5THJ4 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
VPS13DQ5THJ4 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
VPS13DQ5THJ4 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC13.26□□□□□ -0.29
VPS13DQ5THJ4 TUBB8P6-201ENST00000436895 1288 ntBASIC13.26□□□□□ -0.29
VPS13DQ5THJ4 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC13.26□□□□□ -0.29
VPS13DQ5THJ4 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC13.26□□□□□ -0.29
VPS13DQ5THJ4 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC13.26□□□□□ -0.29
VPS13DQ5THJ4 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
VPS13DQ5THJ4 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
VPS13DQ5THJ4 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC13.25□□□□□ -0.29
VPS13DQ5THJ4 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13DQ5THJ4 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC13.25□□□□□ -0.29
VPS13DQ5THJ4 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC13.25□□□□□ -0.29
VPS13DQ5THJ4 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13DQ5THJ4 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC13.25□□□□□ -0.29
VPS13DQ5THJ4 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13DQ5THJ4 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
VPS13DQ5THJ4 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13DQ5THJ4 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC13.25□□□□□ -0.29
VPS13DQ5THJ4 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13DQ5THJ4 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13DQ5THJ4 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13DQ5THJ4 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13DQ5THJ4 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC13.25□□□□□ -0.29
VPS13DQ5THJ4 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
VPS13DQ5THJ4 SMG8-203ENST00000578922 2178 ntBASIC13.25□□□□□ -0.29
VPS13DQ5THJ4 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC13.25□□□□□ -0.29
VPS13DQ5THJ4 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13DQ5THJ4 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
VPS13DQ5THJ4 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13DQ5THJ4 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13DQ5THJ4 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13DQ5THJ4 AC092647.4-201ENST00000457211 535 ntBASIC13.25□□□□□ -0.29
VPS13DQ5THJ4 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC13.25□□□□□ -0.29
VPS13DQ5THJ4 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13DQ5THJ4 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 CD37-204ENST00000535669 1674 ntTSL 2 BASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 AC006128.1-201ENST00000624704 1661 ntBASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 SPDYE13P-201ENST00000445314 798 ntBASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 GCSHP2-201ENST00000560971 527 ntBASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 AP000347.1-202ENST00000435868 847 ntBASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 AL353719.1-201ENST00000566847 864 ntBASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 AC008622.2-201ENST00000617006 1229 ntBASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 AC116562.4-202ENST00000641738 218 ntBASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
VPS13DQ5THJ4 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 10.6 ms